Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0613500-00 | Rice | cytosol | 49.69 | 100.0 |
| Os07t0565000-01 | Rice | cytosol | 100.0 | 100.0 |
| Os07t0565100-00 | Rice | nucleus | 100.0 | 100.0 |
| Os08t0207000-01 | Rice | cytosol | 31.68 | 92.73 |
| TraesCS2B01G443000.1 | Wheat | cytosol, golgi, nucleus, unclear | 90.06 | 91.19 |
| TraesCS2D01G421300.1 | Wheat | cytosol | 90.06 | 91.19 |
| Os04t0502300-01 | Rice | cytosol, plasma membrane, plastid | 89.44 | 90.0 |
| GSMUA_Achr3P13340_001 | Banana | cytosol | 33.54 | 80.6 |
| GSMUA_Achr4P20380_001 | Banana | cytosol | 33.54 | 80.6 |
| HORVU2Hr1G099230.8 | Barley | cytosol, mitochondrion | 90.68 | 70.87 |
Protein Annotations
| MapMan:17.1.3.1.12 | Gene3D:2.40.50.1000 | EntrezGene:4336975 | EntrezGene:4336976 | EntrezGene:4343620 | EntrezGene:9271697 |
| EMBL:AK121056 | ProteinID:BAC79661.1 | ProteinID:BAD30107.1 | ProteinID:BAF15770.2 | ProteinID:BAF21921.1 | ProteinID:BAS90977.1 |
| ProteinID:BAT02171.1 | ProteinID:BAT02172.1 | ProteinID:EEE67424.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0003824 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005840 | GO:GO:0005975 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0022627 | GO:GO:0030312 | GO:GO:0030599 | GO:GO:0042545 | GO:GO:0045330 | GO:GO:0045490 |
| InterPro:NA-bd_OB-fold | EnsemblPlantsGene:Os04g0613600 | EnsemblPlants:Os04t0613600-00 | PFAM:PD001295 | PFAM:PF00366 | PFAM:PF16205 |
| PRINTS:PR00973 | ScanProsite:PS00056 | PANTHER:PTHR10744 | PANTHER:PTHR10744:SF18 | UniProt:Q7XIK5 | InterPro:Ribosomal_S11_N |
| InterPro:Ribosomal_S17/S11 | InterPro:Ribosomal_S17_CS | InterPro:Ribosomal_S17_arc-typ | SUPFAM:SSF50249 | TIGRFAMs:TIGR03630 | UniParc:UPI00001B39B0 |
| RefSeq:XP_015636632.1 | RefSeq:XP_015636633.1 | RefSeq:XP_015646982.1 | RefSeq:XP_015646984.1 | SEG:seg | : |
Description
Similar to 40S ribosomal protein S11. (Os04t0613600-00)
Coordinates
chr4:+:31105989..31107921
Molecular Weight (calculated)
17836.9 Da
IEP (calculated)
11.284
GRAVY (calculated)
-0.506
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEQTEKAFL KQPKVFLSSK KSGKGKKPGK GGNRFWKSIG LGFKTPREAI EGTYIDKKCP FTGTVSIRGR IIAGTCHSAK MNRTIIVRRN YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGSTG GSGGKKAFTA A
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGSTG GSGGKKAFTA A
001: MAEQTEKAFL KQPKVFLSSK ISGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYIDSKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRN YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FGKKAFTGV
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FGKKAFTGV
Arabidopsis Description
RPS11CRPS11-BETA [Source:UniProtKB/TrEMBL;Acc:A0A178UPD3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.