Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- nucleus 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P20380_001 | Banana | cytosol | 88.06 | 88.06 |
| Os08t0207000-01 | Rice | cytosol | 71.64 | 87.27 |
| GSMUA_Achr7P20890_001 | Banana | cytosol | 82.09 | 44.0 |
| GSMUA_Achr9P09150_001 | Banana | cytosol | 80.6 | 38.85 |
| TraesCS4D01G276300.1 | Wheat | mitochondrion, plastid | 68.66 | 36.51 |
| GSMUA_Achr6P35270_001 | Banana | cytosol | 86.57 | 36.48 |
| GSMUA_Achr6P22460_001 | Banana | cytosol | 82.09 | 34.38 |
| TraesCS2D01G421300.1 | Wheat | cytosol | 80.6 | 33.96 |
| TraesCS2B01G443000.1 | Wheat | cytosol, golgi, nucleus, unclear | 80.6 | 33.96 |
| Os04t0613600-00 | Rice | cytosol | 80.6 | 33.54 |
| Os07t0565000-01 | Rice | cytosol | 80.6 | 33.54 |
| Os07t0565100-00 | Rice | nucleus | 80.6 | 33.54 |
| Zm00001d026286_P001 | Maize | cytosol | 77.61 | 32.7 |
| EES11414 | Sorghum | cytosol | 77.61 | 32.7 |
| Zm00001d002339_P001 | Maize | plasma membrane | 77.61 | 32.7 |
| HORVU2Hr1G099230.8 | Barley | cytosol, mitochondrion | 80.6 | 26.21 |
| Os04t0613500-00 | Rice | cytosol | 4.48 | 3.75 |
| GSMUA_Achr4P20370_001 | Banana | cytosol | 5.97 | 3.48 |
| GSMUA_Achr3P13330_001 | Banana | plastid | 10.45 | 3.33 |
Protein Annotations
| MapMan:17.1.3.1.12 | Gene3D:2.40.50.1000 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr3G13340_001 | EnsemblPlants:GSMUA_Achr3P13340_001 |
| EnsemblPlants:GSMUA_Achr3T13340_001 | UniProt:M0SEA1 | InterPro:NA-bd_OB-fold | PFAM:PD001295 | PFAM:PF00366 | PANTHER:PTHR10744 |
| PANTHER:PTHR10744:SF18 | InterPro:Ribosomal_S17/S11 | SUPFAM:SSF50249 | UniParc:UPI0002963B13 | : | : |
Description
40S ribosomal protein S11-1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G13340_001]
Coordinates
chr3:+:9796922..9797521
Molecular Weight (calculated)
7214.9 Da
IEP (calculated)
10.575
GRAVY (calculated)
0.140
Length
67 amino acids
Sequence
(BLAST)
(BLAST)
1: MLFSCLRYEK RHSNIAAHIS PCFRVKEGDH VIIGQCRPLA KTVSFNVLKV IPAGSTSGGG KKAFAAV
001: MAEQTEKAFL KQPKVFLSSK KSGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYVDKKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRD YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHIIIGQCR PLSKTVRFNV LKVIPAGSSS SFGKKAFTGM
101: YEKRHSNIPA HVSPCFRVKE GDHIIIGQCR PLSKTVRFNV LKVIPAGSSS SFGKKAFTGM
Arabidopsis Description
RPS11A40S ribosomal protein S11-1 [Source:UniProtKB/Swiss-Prot;Acc:P16181]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.