Factsheet for GSMUA_Achr6P35270_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P20890_001	Banana	cytosol	74.21	94.4
GSMUA_Achr6P22460_001	Banana	cytosol	94.34	93.75
VIT_04s0008g06220.t01	Wine grape	cytosol	93.08	92.5
VIT_11s0118g00680.t01	Wine grape	cytosol	92.45	91.88
KRH20240	Soybean	nucleus	91.19	91.19
KRH03569	Soybean	cytosol, nucleus	91.19	91.19
Solyc12g042080.1.1	Tomato	nucleus	90.57	90.57
PGSC0003DMT400015118	Potato	cytosol	88.68	90.38
KRH37857	Soybean	cytosol	89.94	89.94
Solyc06g073790.2.1	Tomato	cytosol	89.94	89.94
Solyc06g073800.2.1	Tomato	cytosol, nucleus	89.94	89.94
PGSC0003DMT400013305	Potato	cytosol	88.05	88.05
Os04t0502300-01	Rice	cytosol, plasma membrane, plastid	87.42	86.88
GSMUA_Achr3P13340_001	Banana	cytosol	36.48	86.57
EES12457	Sorghum	cytosol	86.79	86.25
GSMUA_Achr4P20370_001	Banana	cytosol	62.26	86.09
OQU85305	Sorghum	cytosol	85.53	85.0
AT5G23740.1	Thale cress	cytosol	84.91	84.91
PGSC0003DMT400015122	Potato	mitochondrion	53.46	84.16
Zm00001d003118_P001	Maize	cytosol	83.02	84.08
TraesCS6D01G203900.1	Wheat	cytosol	84.91	83.85
AT3G48930.1	Thale cress	cytosol	83.65	83.12
KRH75732	Soybean	cytosol, plastid	61.64	83.05
Bra029928.1-P	Field mustard	cytosol	83.02	83.02
Bra009706.1-P	Field mustard	cytosol	83.02	83.02
AT4G30800.1	Thale cress	cytosol	83.02	83.02
TraesCS6A01G231200.1	Wheat	cytosol	83.65	82.61
Bra029381.1-P	Field mustard	cytosol	82.39	82.39
Bra026484.1-P	Field mustard	cytosol	82.39	82.39
GSMUA_Achr4P20380_001	Banana	cytosol	34.59	82.09
KRH37858	Soybean	endoplasmic reticulum, extracellular	88.05	79.1
PGSC0003DMT400015117	Potato	cytosol	85.53	75.98
HORVU6Hr1G056610.3	Barley	mitochondrion	83.65	72.28
GSMUA_Achr9P09150_001	Banana	cytosol	62.89	71.94
GSMUA_Achr3P13330_001	Banana	plastid	62.26	47.14
Bra018026.1-P	Field mustard	cytosol	74.21	42.14

Protein Annotations

MapMan:17.1.3.1.12	Gene3D:2.40.50.1000	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G35270_001	EnsemblPlants:GSMUA_Achr6P35270_001
EnsemblPlants:GSMUA_Achr6T35270_001	UniProt:M0TCX0	InterPro:NA-bd_OB-fold	PFAM:PD001295	PFAM:PF00366	PFAM:PF16205
PRINTS:PR00973	PANTHER:PTHR10744	PANTHER:PTHR10744:SF17	InterPro:Ribosomal_S11_N	InterPro:Ribosomal_S17/S11	InterPro:Ribosomal_S17_arc-typ
SUPFAM:SSF50249	TIGRFAMs:TIGR03630	UniParc:UPI000296F5C2	SEG:seg	:	:

Description

40S ribosomal protein S11 [Source:GMGC_GENE;Acc:GSMUA_Achr6G35270_001]

Coordinates

chr6:+:33534138..33538289

Molecular Weight (calculated)

17730.9 Da

IEP (calculated)

11.102

GRAVY (calculated)

-0.467

Length

159 amino acids

Sequence
(BLAST)

001: MAEQTEKAFL KQPKVFLCPK KPGKGKRPGK GGNRFWKSIG LGFKTPREAI EGTYIDKKCP FTGNVSIRGR ILAGTCHSAK MNRTIIVRRN YLHYVKKYQR
101: YEKRHSNIAA HISPCFRVKE GDHVIIGQCR PLAKTVTFNV LKVIPAGSTG GGKKAFTAV

Best Arabidopsis Sequence Match ( AT5G23740.1 )
(BLAST)

001: MAEQTEKAFL KQPKVFLSSK ISGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYIDSKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRN YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FGKKAFTGV

Arabidopsis Description

RPS11CRPS11-BETA [Source:UniProtKB/TrEMBL;Acc:A0A178UPD3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.