Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- plastid 1
- cytosol 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87158 | Canola | cytosol | 100.0 | 100.0 |
| CDY69343 | Canola | cytosol | 100.0 | 100.0 |
| Bra029381.1-P | Field mustard | cytosol | 98.74 | 98.74 |
| Bra009706.1-P | Field mustard | cytosol | 97.48 | 97.48 |
| CDY16867 | Canola | cytosol | 97.48 | 97.48 |
| Bra029928.1-P | Field mustard | cytosol | 96.23 | 96.23 |
| AT5G23740.1 | Thale cress | cytosol | 94.97 | 94.97 |
| KRH37857 | Soybean | cytosol | 87.42 | 87.42 |
| VIT_11s0118g00680.t01 | Wine grape | cytosol | 87.42 | 86.88 |
| EES12457 | Sorghum | cytosol | 87.42 | 86.88 |
| KRH03569 | Soybean | cytosol, nucleus | 86.16 | 86.16 |
| VIT_04s0008g06220.t01 | Wine grape | cytosol | 86.16 | 85.62 |
| Os04t0502300-01 | Rice | cytosol, plasma membrane, plastid | 86.16 | 85.62 |
| OQU85305 | Sorghum | cytosol | 86.16 | 85.62 |
| KRH20240 | Soybean | nucleus | 85.53 | 85.53 |
| Zm00001d003118_P001 | Maize | cytosol | 83.65 | 84.71 |
| Solyc12g042080.1.1 | Tomato | nucleus | 84.28 | 84.28 |
| Solyc06g073800.2.1 | Tomato | cytosol, nucleus | 84.28 | 84.28 |
| Solyc06g073790.2.1 | Tomato | cytosol | 84.28 | 84.28 |
| PGSC0003DMT400015118 | Potato | cytosol | 81.76 | 83.33 |
| KRH75732 | Soybean | cytosol, plastid | 61.64 | 83.05 |
| TraesCS6D01G203900.1 | Wheat | cytosol | 83.65 | 82.61 |
| GSMUA_Achr6P35270_001 | Banana | cytosol | 82.39 | 82.39 |
| PGSC0003DMT400013305 | Potato | cytosol | 81.76 | 81.76 |
| TraesCS6A01G231200.1 | Wheat | cytosol | 82.39 | 81.37 |
| GSMUA_Achr7P20890_001 | Banana | cytosol | 63.52 | 80.8 |
| GSMUA_Achr6P22460_001 | Banana | cytosol | 80.5 | 80.0 |
| PGSC0003DMT400015122 | Potato | mitochondrion | 50.31 | 79.21 |
| GSMUA_Achr4P20370_001 | Banana | cytosol | 56.6 | 78.26 |
| KRH37858 | Soybean | endoplasmic reticulum, extracellular | 84.91 | 76.27 |
| HORVU6Hr1G056610.3 | Barley | mitochondrion | 81.76 | 70.65 |
| PGSC0003DMT400015117 | Potato | cytosol | 79.25 | 70.39 |
| GSMUA_Achr9P09150_001 | Banana | cytosol | 55.97 | 64.03 |
| Bra018026.1-P | Field mustard | cytosol | 86.16 | 48.93 |
| GSMUA_Achr3P13330_001 | Banana | plastid | 56.6 | 42.86 |
Protein Annotations
| MapMan:17.1.3.1.12 | Gene3D:2.40.50.1000 | EnsemblPlantsGene:Bra026484 | EnsemblPlants:Bra026484.1 | EnsemblPlants:Bra026484.1-P | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0030529 | UniProt:M4ECH4 | InterPro:NA-bd_OB-fold | PFAM:PD001295 | PFAM:PF00366 |
| PFAM:PF16205 | PRINTS:PR00973 | ScanProsite:PS00056 | PANTHER:PTHR10744 | PANTHER:PTHR10744:SF17 | InterPro:Ribosomal_S11_N |
| InterPro:Ribosomal_S17/S11 | InterPro:Ribosomal_S17_CS | InterPro:Ribosomal_S17_arc-typ | SUPFAM:SSF50249 | TIGRFAMs:TIGR03630 | UniParc:UPI0001BA8D9D |
| SEG:seg | : | : | : | : | : |
Description
AT5G23740 (E=7e-077) RPS11-BETA | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA); structural constituent of ribosome
Coordinates
chrA01:-:9059208..9059929
Molecular Weight (calculated)
17926.1 Da
IEP (calculated)
11.418
GRAVY (calculated)
-0.486
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEQTEKAFL KQPKVFLSSK KSGKGKRPGK GGNRFWKNIG LSFKTPRDAI DGTYIDRKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRN YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FAKKAFTGM
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FAKKAFTGM
001: MAEQTEKAFL KQPKVFLSSK ISGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYIDSKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRN YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FGKKAFTGV
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FGKKAFTGV
Arabidopsis Description
RPS11CRPS11-BETA [Source:UniProtKB/TrEMBL;Acc:A0A178UPD3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.