Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g042080.1.1 | Tomato | nucleus | 97.48 | 97.48 |
| PGSC0003DMT400015118 | Potato | cytosol | 95.6 | 97.44 |
| KRH03569 | Soybean | cytosol, nucleus | 89.31 | 89.31 |
| KRH20240 | Soybean | nucleus | 88.68 | 88.68 |
| VIT_04s0008g06220.t01 | Wine grape | cytosol | 88.68 | 88.12 |
| PGSC0003DMT400015122 | Potato | mitochondrion | 55.97 | 88.12 |
| GSMUA_Achr6P35270_001 | Banana | cytosol | 88.05 | 88.05 |
| VIT_11s0118g00680.t01 | Wine grape | cytosol | 88.05 | 87.5 |
| KRH37857 | Soybean | cytosol | 86.79 | 86.79 |
| GSMUA_Achr7P20890_001 | Banana | cytosol | 67.3 | 85.6 |
| GSMUA_Achr6P22460_001 | Banana | cytosol | 85.53 | 85.0 |
| AT4G30800.1 | Thale cress | cytosol | 84.91 | 84.91 |
| KRH75732 | Soybean | cytosol, plastid | 62.89 | 84.75 |
| CDX83060 | Canola | cytosol | 83.02 | 83.02 |
| Bra029928.1-P | Field mustard | cytosol | 83.02 | 83.02 |
| AT5G23740.1 | Thale cress | cytosol | 83.02 | 83.02 |
| CDY64707 | Canola | cytosol | 83.02 | 83.02 |
| PGSC0003DMT400015117 | Potato | cytosol | 93.08 | 82.68 |
| AT3G48930.1 | Thale cress | cytosol | 83.02 | 82.5 |
| EES12457 | Sorghum | cytosol | 83.02 | 82.5 |
| Os04t0502300-01 | Rice | cytosol, plasma membrane, plastid | 83.02 | 82.5 |
| CDY05882 | Canola | cytosol | 82.39 | 82.39 |
| Bra009706.1-P | Field mustard | cytosol | 82.39 | 82.39 |
| CDX87158 | Canola | cytosol | 81.76 | 81.76 |
| CDY69343 | Canola | cytosol | 81.76 | 81.76 |
| CDY46968 | Canola | cytosol | 81.76 | 81.76 |
| Bra026484.1-P | Field mustard | cytosol | 81.76 | 81.76 |
| CDY16867 | Canola | cytosol | 81.76 | 81.76 |
| Bra029381.1-P | Field mustard | cytosol | 81.76 | 81.76 |
| TraesCS6D01G203900.1 | Wheat | cytosol | 82.39 | 81.37 |
| OQU85305 | Sorghum | cytosol | 81.76 | 81.25 |
| Zm00001d003118_P001 | Maize | cytosol | 79.87 | 80.89 |
| TraesCS6A01G231200.1 | Wheat | cytosol | 81.13 | 80.12 |
| GSMUA_Achr4P20370_001 | Banana | cytosol | 57.23 | 79.13 |
| KRH37858 | Soybean | endoplasmic reticulum, extracellular | 84.91 | 76.27 |
| CDY44261 | Canola | cytosol | 79.87 | 71.75 |
| CDX96205 | Canola | cytosol | 65.41 | 71.23 |
| HORVU6Hr1G056610.3 | Barley | mitochondrion | 79.87 | 69.02 |
| GSMUA_Achr9P09150_001 | Banana | cytosol | 58.49 | 66.91 |
| CDX88047 | Canola | vacuole | 82.39 | 63.59 |
| CDY64632 | Canola | extracellular | 82.39 | 56.96 |
| CDX91453 | Canola | cytosol | 67.3 | 44.03 |
| GSMUA_Achr3P13330_001 | Banana | plastid | 57.86 | 43.81 |
| Bra018026.1-P | Field mustard | cytosol | 75.47 | 42.86 |
| CDX80385 | Canola | cytosol | 82.39 | 33.76 |
Protein Annotations
| MapMan:17.1.3.1.12 | Gene3D:2.40.50.1000 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030529 | UniProt:M1A2N0 |
| InterPro:NA-bd_OB-fold | PFAM:PD001295 | PFAM:PF00366 | PFAM:PF16205 | EnsemblPlantsGene:PGSC0003DMG400005192 | PGSC:PGSC0003DMG400005192 |
| EnsemblPlants:PGSC0003DMT400013305 | PRINTS:PR00973 | ScanProsite:PS00056 | PANTHER:PTHR10744 | PANTHER:PTHR10744:SF17 | InterPro:Ribosomal_S11_N |
| InterPro:Ribosomal_S17/S11 | InterPro:Ribosomal_S17_CS | InterPro:Ribosomal_S17_arc-typ | SUPFAM:SSF50249 | TIGRFAMs:TIGR03630 | UniParc:UPI000295CF6D |
| SEG:seg | : | : | : | : | : |
Description
40S ribosomal protein S11 [Source:PGSC_GENE;Acc:PGSC0003DMG400005192]
Coordinates
chr1:-:63341622..63342184
Molecular Weight (calculated)
17671.8 Da
IEP (calculated)
11.185
GRAVY (calculated)
-0.592
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEQTEKAFL KQPGVFLSSK KTGKGKRPGK GGNRYFKSIV LGSKTPREAT EGTYIDKKCP FTGNVSIRGR ILVGTCHSAK MNRTIIVRRN YLHYVKKYKR
101: YEKRHSNIPA HISPCFRVKE GDHVTIGQCR PLSKTVRFNV LKVIPAGSGG GGKKAFTGM
101: YEKRHSNIPA HISPCFRVKE GDHVTIGQCR PLSKTVRFNV LKVIPAGSGG GGKKAFTGM
001: MAEQTEKAFL KQPKVFLSSK KSGKGKRPGK GGNRFWKNIG LGFKTPREAI EGTYIDQKCP FTGTVSIRGR ILSGTCHSAK MQRTIIVRRD YLHFVKKYRR
101: YEKRHSNIPA HVSPCFRVKE GDRVTIGQCR PLSKTVRFNV LKVIPAGSSS IGKKAFTGM
101: YEKRHSNIPA HVSPCFRVKE GDRVTIGQCR PLSKTVRFNV LKVIPAGSSS IGKKAFTGM
Arabidopsis Description
RPS11B40S ribosomal protein S11-2 [Source:UniProtKB/Swiss-Prot;Acc:O65569]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.