Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009706.1-P | Field mustard | cytosol | 40.98 | 100.0 |
| CDY46968 | Canola | cytosol | 40.46 | 98.74 |
| CDX87158 | Canola | cytosol | 39.95 | 97.48 |
| CDY69343 | Canola | cytosol | 39.95 | 97.48 |
| CDX87000 | Canola | cytosol | 12.63 | 96.08 |
| CDY16867 | Canola | cytosol | 39.18 | 95.6 |
| CDX83060 | Canola | cytosol | 38.92 | 94.97 |
| AT5G23740.1 | Thale cress | cytosol | 38.92 | 94.97 |
| CDY05882 | Canola | cytosol | 38.4 | 93.71 |
| CDY64707 | Canola | cytosol | 38.4 | 93.71 |
| KRH37857 | Soybean | cytosol | 36.08 | 88.05 |
| VIT_11s0118g00680.t01 | Wine grape | cytosol | 36.08 | 87.5 |
| EES12457 | Sorghum | cytosol | 35.82 | 86.88 |
| KRH03569 | Soybean | cytosol, nucleus | 35.57 | 86.79 |
| VIT_04s0008g06220.t01 | Wine grape | cytosol | 35.57 | 86.25 |
| KRH20240 | Soybean | nucleus | 35.31 | 86.16 |
| CDY44261 | Canola | cytosol | 39.18 | 85.88 |
| Os04t0502300-01 | Rice | cytosol, plasma membrane, plastid | 35.31 | 85.62 |
| OQU85305 | Sorghum | cytosol | 35.31 | 85.62 |
| CDX96205 | Canola | cytosol | 32.22 | 85.62 |
| Solyc12g042080.1.1 | Tomato | nucleus | 34.79 | 84.91 |
| Solyc06g073800.2.1 | Tomato | cytosol, nucleus | 34.79 | 84.91 |
| Solyc06g073790.2.1 | Tomato | cytosol | 34.79 | 84.91 |
| Zm00001d003118_P001 | Maize | cytosol | 34.28 | 84.71 |
| PGSC0003DMT400015118 | Potato | cytosol | 33.76 | 83.97 |
| KRH75732 | Soybean | cytosol, plastid | 25.26 | 83.05 |
| TraesCS6A01G231200.1 | Wheat | cytosol | 34.28 | 82.61 |
| TraesCS6D01G203900.1 | Wheat | cytosol | 34.28 | 82.61 |
| PGSC0003DMT400013305 | Potato | cytosol | 33.76 | 82.39 |
| CDX88047 | Canola | vacuole | 43.04 | 81.07 |
| PGSC0003DMT400015122 | Potato | mitochondrion | 20.62 | 79.21 |
| KRH37858 | Soybean | endoplasmic reticulum, extracellular | 35.57 | 77.97 |
| PGSC0003DMT400015117 | Potato | cytosol | 32.99 | 71.51 |
| HORVU6Hr1G056610.3 | Barley | mitochondrion | 33.51 | 70.65 |
| CDY64632 | Canola | extracellular | 40.46 | 68.26 |
| CDX86999 | Canola | mitochondrion | 12.89 | 56.18 |
| CDX91453 | Canola | cytosol | 34.02 | 54.32 |
Protein Annotations
| MapMan:17.1.3.1.12 | Gene3D:2.40.50.1000 | GO:A0A078CU47 | EnsemblPlants:CDX80385 | ProteinID:CDX80385 | ProteinID:CDX80385.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00133449001 | InterPro:NA-bd_OB-fold | PFAM:PD001295 |
| PFAM:PF00366 | PFAM:PF03763 | PFAM:PF03766 | PFAM:PF16205 | PRINTS:PR00973 | ScanProsite:PS00056 |
| PANTHER:PTHR10744 | PANTHER:PTHR10744:SF17 | InterPro:Remorin_C | InterPro:Remorin_N | InterPro:Ribosomal_S11_N | InterPro:Ribosomal_S17/S11 |
| InterPro:Ribosomal_S17_CS | InterPro:Ribosomal_S17_arc-typ | SUPFAM:SSF50249 | TIGRFAMs:TIGR03630 | UniParc:UPI0004EE1DCF | SEG:seg |
Description
BnaC07g30590D
Coordinates
chrLK031821:-:159752..163066
Molecular Weight (calculated)
43042.3 Da
IEP (calculated)
10.317
GRAVY (calculated)
-0.598
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEESKKVT ENVTTVPEPT PTAPAPVDKP VDAVDVAPQE KPVAPPPVLP SPAPVEEKLE DSKALVPIVA KEAGEEKKEG SVNRDAVLAR VETEKRMSLI
101: KAWEEAEKCK VENKAEKKLS SIGSWENNKK AAVEAELKKM EEQLEKKKAE NVELMKNKIA QIHKQAEEKR AMIEARRGEE VLKAEELAAK YRATGTAPKK
201: LFGCIFTASL LHLISPQSIS GEQQHQPVAM AEQTEKAFLK QPKVFLSSKK SGKGKRPGKG GNRFWKNIGL GFKTPRDAID GHYIDKKCPF TGTVSVRGRI
301: LAGTCHSAKM QRTIIVRRNY LHFVKKYQRY EKRHSNIPAH VSPCFRVKEG DHVIIGQCRP LSKTVRFNVL KVIPAGASAF AKKAFTGM
101: KAWEEAEKCK VENKAEKKLS SIGSWENNKK AAVEAELKKM EEQLEKKKAE NVELMKNKIA QIHKQAEEKR AMIEARRGEE VLKAEELAAK YRATGTAPKK
201: LFGCIFTASL LHLISPQSIS GEQQHQPVAM AEQTEKAFLK QPKVFLSSKK SGKGKRPGKG GNRFWKNIGL GFKTPRDAID GHYIDKKCPF TGTVSVRGRI
301: LAGTCHSAKM QRTIIVRRNY LHFVKKYQRY EKRHSNIPAH VSPCFRVKEG DHVIIGQCRP LSKTVRFNVL KVIPAGASAF AKKAFTGM
001: MAEQTEKAFL KQPKVFLSSK ISGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYIDSKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRN YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FGKKAFTGV
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FGKKAFTGV
Arabidopsis Description
RPS11CRPS11-BETA [Source:UniProtKB/TrEMBL;Acc:A0A178UPD3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.