Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- peroxisome 1
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96205 | Canola | cytosol | 92.16 | 32.19 |
| CDX83060 | Canola | cytosol | 96.08 | 30.82 |
| CDX87158 | Canola | cytosol | 96.08 | 30.82 |
| CDY05882 | Canola | cytosol | 96.08 | 30.82 |
| CDY69343 | Canola | cytosol | 96.08 | 30.82 |
| CDY46968 | Canola | cytosol | 96.08 | 30.82 |
| CDY64707 | Canola | cytosol | 96.08 | 30.82 |
| CDY16867 | Canola | cytosol | 92.16 | 29.56 |
| Os04t0502300-01 | Rice | cytosol, plasma membrane, plastid | 92.16 | 29.38 |
| OQU85305 | Sorghum | cytosol | 92.16 | 29.38 |
| EES12457 | Sorghum | cytosol | 92.16 | 29.38 |
| Zm00001d003118_P001 | Maize | cytosol | 86.27 | 28.03 |
| TraesCS6A01G231200.1 | Wheat | cytosol | 88.24 | 27.95 |
| TraesCS6D01G203900.1 | Wheat | cytosol | 88.24 | 27.95 |
| CDY44261 | Canola | cytosol | 94.12 | 27.12 |
| HORVU6Hr1G056610.3 | Barley | mitochondrion | 88.24 | 24.46 |
| CDX88047 | Canola | vacuole | 96.08 | 23.79 |
| CDY64632 | Canola | extracellular | 96.08 | 21.3 |
| CDX91453 | Canola | cytosol | 90.2 | 18.93 |
| GSMUA_Achr4P20370_001 | Banana | cytosol | 37.25 | 16.52 |
| CDX80385 | Canola | cytosol | 96.08 | 12.63 |
| GSMUA_Achr3P13330_001 | Banana | plastid | 45.1 | 10.95 |
| CDX86999 | Canola | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| MapMan:17.1.3.1.12 | Gene3D:2.40.50.1000 | GO:A0A078DCP5 | EnsemblPlants:CDX87000 | ProteinID:CDX87000 | ProteinID:CDX87000.1 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00145856001 | InterPro:NA-bd_OB-fold | PFAM:PD001295 | PFAM:PF00366 |
| PRINTS:PR00973 | PANTHER:PTHR10744 | PANTHER:PTHR10744:SF18 | InterPro:Ribosomal_S17/S11 | SUPFAM:SSF50249 | UniParc:UPI0004EE7EE0 |
Description
BnaC03g52700D
Coordinates
chrLK031848:+:1466380..1466614
Molecular Weight (calculated)
6250.8 Da
IEP (calculated)
10.906
GRAVY (calculated)
-0.594
Length
51 amino acids
Sequence
(BLAST)
(BLAST)
1: MQRTIIVRRN YLHFVKKYQR YEKRHSNIPV HVSPCFRVKE GDHVIIGQCR L
001: MAEQTEKAFL KQPKVFLSSK ISGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYIDSKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRN YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FGKKAFTGV
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FGKKAFTGV
Arabidopsis Description
RPS11CRPS11-BETA [Source:UniProtKB/TrEMBL;Acc:A0A178UPD3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.