CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

mitochondrion 3
plastid 2
cytosol 2

Predictors

GFP

MS/MS

Papers

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83060	Canola	cytosol	68.7	99.37
CDY64707	Canola	cytosol	67.39	97.48
CDY05882	Canola	cytosol	67.39	97.48
CDX87000	Canola	cytosol	21.3	96.08
CDX87158	Canola	cytosol	66.09	95.6
CDY69343	Canola	cytosol	66.09	95.6
CDY46968	Canola	cytosol	66.09	95.6
CDY16867	Canola	cytosol	65.22	94.34
AT3G48930.1	Thale cress	cytosol	63.48	91.25
EES12457	Sorghum	cytosol	60.87	87.5
KRH03569	Soybean	cytosol, nucleus	60.0	86.79
OQU85305	Sorghum	cytosol	60.0	86.25
Os04t0502300-01	Rice	cytosol, plasma membrane, plastid	60.0	86.25
KRH20240	Soybean	nucleus	59.57	86.16
KRH37857	Soybean	cytosol	59.57	86.16
VIT_11s0118g00680.t01	Wine grape	cytosol	59.57	85.62
Zm00001d003118_P001	Maize	cytosol	58.26	85.35
PGSC0003DMT400015118	Potato	cytosol	57.83	85.26
Solyc12g042080.1.1	Tomato	nucleus	58.7	84.91
Solyc06g073800.2.1	Tomato	cytosol, nucleus	58.7	84.91
Solyc06g073790.2.1	Tomato	cytosol	58.7	84.91
VIT_04s0008g06220.t01	Wine grape	cytosol	58.7	84.38
CDX96205	Canola	cytosol	53.48	84.25
CDY44261	Canola	cytosol	64.78	84.18
TraesCS6D01G203900.1	Wheat	cytosol	58.26	83.23
KRH75732	Soybean	cytosol, plastid	42.61	83.05
PGSC0003DMT400013305	Potato	cytosol	56.96	82.39
TraesCS6A01G231200.1	Wheat	cytosol	57.39	81.99
PGSC0003DMT400015122	Potato	mitochondrion	34.78	79.21
KRH37858	Soybean	endoplasmic reticulum, extracellular	58.26	75.71
CDX88047	Canola	vacuole	67.39	75.24
HORVU6Hr1G056610.3	Barley	mitochondrion	57.83	72.28
PGSC0003DMT400015117	Potato	cytosol	56.09	72.07
CDX86999	Canola	mitochondrion	23.04	59.55
CDX91453	Canola	cytosol	56.96	53.91
CDX80385	Canola	cytosol	68.26	40.46

Protein Annotations

MapMan:17.1.3.1.12	Gene3D:2.40.50.1000	GO:A0A078JGQ7	UniProt:A0A078JGQ7	EnsemblPlants:CDY64632	ProteinID:CDY64632
ProteinID:CDY64632.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00042463001	InterPro:NA-bd_OB-fold
PFAM:PD001295	PFAM:PF00366	PFAM:PF16205	PRINTS:PR00973	ScanProsite:PS00056	PANTHER:PTHR10744
PANTHER:PTHR10744:SF17	InterPro:Ribosomal_S11_N	InterPro:Ribosomal_S17/S11	InterPro:Ribosomal_S17_CS	InterPro:Ribosomal_S17_arc-typ	SUPFAM:SSF50249
TIGRFAMs:TIGR03630	UniParc:UPI0004EF00FA	SEG:seg	:	:	:

Description

BnaCnng44460DBnaCnng44460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JGQ7]

Coordinates

chrLK034506:-:15947..19952

Molecular Weight (calculated)

25799.8 Da

IEP (calculated)

11.510

GRAVY (calculated)

-0.255

Length

230 amino acids

Sequence
(BLAST)

001: MNATRPHGHT ATRRVGGNFS LYKDSLYTRV FFLKAFSRHC LSYRLVILAS SFHKTAAMAE QTEKAFLKQP KVFLSSKISG KGKRPGKGGN RFSKNIGLGF
101: KTPREAIQGT YIDRKCPFTG TVSIRGRILA GTCHSAKMQR TIIVRRNYLH FVKKYQRYEK RHSNIPAHVS PCFRVKEGDH VIIGQCRPLS KTVRFNVLKV
201: IPAGASAFAK KAFTGILLIE TILLANSINN

Best Arabidopsis Sequence Match ( AT5G23740.1 )
(BLAST)

001: MAEQTEKAFL KQPKVFLSSK ISGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYIDSKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRN YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FGKKAFTGV

Arabidopsis Description

RPS11CRPS11-BETA [Source:UniProtKB/TrEMBL;Acc:A0A178UPD3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.