Factsheet for PGSC0003DMT400015122

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75732	Soybean	cytosol, plastid	80.2	68.64
PGSC0003DMT400015118	Potato	cytosol	88.12	57.05
Solyc06g073800.2.1	Tomato	cytosol, nucleus	89.11	56.6
Solyc06g073790.2.1	Tomato	cytosol	89.11	56.6
PGSC0003DMT400013305	Potato	cytosol	88.12	55.97
GSMUA_Achr9P09150_001	Banana	cytosol	76.24	55.4
CDX96205	Canola	cytosol	78.22	54.11
VIT_11s0118g00680.t01	Wine grape	cytosol	85.15	53.75
VIT_04s0008g06220.t01	Wine grape	cytosol	85.15	53.75
GSMUA_Achr6P35270_001	Banana	cytosol	84.16	53.46
KRH20240	Soybean	nucleus	83.17	52.83
KRH03569	Soybean	cytosol, nucleus	83.17	52.83
KRH37857	Soybean	cytosol	81.19	51.57
EES12457	Sorghum	cytosol	81.19	51.25
Os04t0502300-01	Rice	cytosol, plasma membrane, plastid	81.19	51.25
OQU85305	Sorghum	cytosol	81.19	51.25
AT5G23740.1	Thale cress	cytosol	80.2	50.94
TraesCS6A01G231200.1	Wheat	cytosol	81.19	50.93
TraesCS6D01G203900.1	Wheat	cytosol	81.19	50.93
GSMUA_Achr6P22460_001	Banana	cytosol	80.2	50.62
Bra026484.1-P	Field mustard	cytosol	79.21	50.31
CDY69343	Canola	cytosol	79.21	50.31
Bra009706.1-P	Field mustard	cytosol	79.21	50.31
CDY46968	Canola	cytosol	79.21	50.31
CDX87158	Canola	cytosol	79.21	50.31
Bra029381.1-P	Field mustard	cytosol	79.21	50.31
AT3G48930.1	Thale cress	cytosol	79.21	50.0
CDY64707	Canola	cytosol	78.22	49.69
CDY05882	Canola	cytosol	78.22	49.69
CDX83060	Canola	cytosol	78.22	49.69
Bra029928.1-P	Field mustard	cytosol	78.22	49.69
AT4G30800.1	Thale cress	cytosol	78.22	49.69
Zm00001d003118_P001	Maize	cytosol	77.23	49.68
CDY16867	Canola	cytosol	77.23	49.06
PGSC0003DMT400015117	Potato	cytosol	86.14	48.6
KRH37858	Soybean	endoplasmic reticulum, extracellular	80.2	45.76
CDY44261	Canola	cytosol	77.23	44.07
HORVU6Hr1G056610.3	Barley	mitochondrion	80.2	44.02
GSMUA_Achr7P20890_001	Banana	cytosol	52.48	42.4
CDX88047	Canola	vacuole	79.21	38.84
CDY64632	Canola	extracellular	79.21	34.78
CDX91453	Canola	cytosol	76.24	31.69
GSMUA_Achr4P20370_001	Banana	cytosol	34.65	30.43
Bra018026.1-P	Field mustard	cytosol	77.23	27.86
CDX80385	Canola	cytosol	79.21	20.62
GSMUA_Achr3P13330_001	Banana	plastid	37.62	18.1

Protein Annotations

MapMan:17.1.3.1.12	Gene3D:2.40.50.1000	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	UniProt:M1A5H9
InterPro:NA-bd_OB-fold	PFAM:PD001295	PFAM:PF00366	EnsemblPlantsGene:PGSC0003DMG403005911	PGSC:PGSC0003DMG403005911	EnsemblPlants:PGSC0003DMT400015122
PRINTS:PR00973	ScanProsite:PS00056	PANTHER:PTHR10744	PANTHER:PTHR10744:SF17	InterPro:Ribosomal_S17/S11	InterPro:Ribosomal_S17_CS
SUPFAM:SSF50249	UniParc:UPI000294C03A	SEG:seg	:	:	:

Description

40S ribosomal protein S11 [Source:PGSC_GENE;Acc:PGSC0003DMG403005911]

Coordinates

chr6:-:54381540..54383364

Molecular Weight (calculated)

11594.3 Da

IEP (calculated)

11.114

GRAVY (calculated)

-0.429

Length

101 amino acids

Sequence
(BLAST)

001: MPIHWQCFYP RRILAGTCHS AKMNRTIIVR RNYLHYVKKY QRYEKRHSNI PAHISPCFRV KEGDHVTIGQ CRPLSKTVRF NVLKVIPAGS GGGGKKAFTG
101: I

Best Arabidopsis Sequence Match ( AT5G23740.1 )
(BLAST)

001: MAEQTEKAFL KQPKVFLSSK ISGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYIDSKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRN YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FGKKAFTGV

Arabidopsis Description

RPS11CRPS11-BETA [Source:UniProtKB/TrEMBL;Acc:A0A178UPD3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.