Factsheet for Bra009706.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029381.1-P	Field mustard	cytosol	98.74	98.74
Bra026484.1-P	Field mustard	cytosol	97.48	97.48
AT5G23740.1	Thale cress	cytosol	94.97	94.97
Bra029928.1-P	Field mustard	cytosol	94.97	94.97
KRH37857	Soybean	cytosol	88.05	88.05
VIT_11s0118g00680.t01	Wine grape	cytosol	88.05	87.5
EES12457	Sorghum	cytosol	87.42	86.88
KRH03569	Soybean	cytosol, nucleus	86.79	86.79
VIT_04s0008g06220.t01	Wine grape	cytosol	86.79	86.25
KRH20240	Soybean	nucleus	86.16	86.16
Os04t0502300-01	Rice	cytosol, plasma membrane, plastid	86.16	85.62
OQU85305	Sorghum	cytosol	86.16	85.62
Solyc12g042080.1.1	Tomato	nucleus	84.91	84.91
Solyc06g073800.2.1	Tomato	cytosol, nucleus	84.91	84.91
Solyc06g073790.2.1	Tomato	cytosol	84.91	84.91
Zm00001d003118_P001	Maize	cytosol	83.65	84.71
PGSC0003DMT400015118	Potato	cytosol	82.39	83.97
KRH75732	Soybean	cytosol, plastid	61.64	83.05
GSMUA_Achr6P35270_001	Banana	cytosol	83.02	83.02
TraesCS6A01G231200.1	Wheat	cytosol	83.65	82.61
TraesCS6D01G203900.1	Wheat	cytosol	83.65	82.61
GSMUA_Achr7P20890_001	Banana	cytosol	64.78	82.4
PGSC0003DMT400013305	Potato	cytosol	82.39	82.39
GSMUA_Achr6P22460_001	Banana	cytosol	81.13	80.62
PGSC0003DMT400015122	Potato	mitochondrion	50.31	79.21
GSMUA_Achr4P20370_001	Banana	cytosol	57.23	79.13
CDX88047	Canola	vacuole	100.0	77.18
KRH37858	Soybean	endoplasmic reticulum, extracellular	85.53	76.84
PGSC0003DMT400015117	Potato	cytosol	79.87	70.95
HORVU6Hr1G056610.3	Barley	mitochondrion	81.76	70.65
GSMUA_Achr9P09150_001	Banana	cytosol	55.35	63.31
Bra018026.1-P	Field mustard	cytosol	85.53	48.57
GSMUA_Achr3P13330_001	Banana	plastid	57.23	43.33
CDX80385	Canola	cytosol	100.0	40.98

Protein Annotations

MapMan:17.1.3.1.12	Gene3D:2.40.50.1000	EnsemblPlantsGene:Bra009706	EnsemblPlants:Bra009706.1	EnsemblPlants:Bra009706.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0030529	UniProt:M4CZQ9	InterPro:NA-bd_OB-fold	PFAM:PD001295	PFAM:PF00366
PFAM:PF16205	PRINTS:PR00973	ScanProsite:PS00056	PANTHER:PTHR10744	PANTHER:PTHR10744:SF17	InterPro:Ribosomal_S11_N
InterPro:Ribosomal_S17/S11	InterPro:Ribosomal_S17_CS	InterPro:Ribosomal_S17_arc-typ	SUPFAM:SSF50249	TIGRFAMs:TIGR03630	UniParc:UPI000253F103
SEG:seg	:	:	:	:	:

Description

AT5G23740 (E=2e-077) RPS11-BETA | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA); structural constituent of ribosome

Coordinates

chrA06:-:16658260..16659183

Molecular Weight (calculated)

17890.1 Da

IEP (calculated)

11.348

GRAVY (calculated)

-0.497

Length

159 amino acids

Sequence
(BLAST)

001: MAEQTEKAFL KQPKVFLSSK KSGKGKRPGK GGNRFWKNIG LGFKTPRDAI DGHYIDKKCP FTGTVSVRGR ILAGTCHSAK MQRTIIVRRN YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FAKKAFTGM

Best Arabidopsis Sequence Match ( AT5G23740.1 )
(BLAST)

001: MAEQTEKAFL KQPKVFLSSK ISGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYIDSKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRN YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FGKKAFTGV

Arabidopsis Description

RPS11CRPS11-BETA [Source:UniProtKB/TrEMBL;Acc:A0A178UPD3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.