Factsheet for GSMUA_Achr7P20890_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P20380_001	Banana	cytosol	47.2	88.06
GSMUA_Achr3P13340_001	Banana	cytosol	44.0	82.09
GSMUA_Achr6P22460_001	Banana	cytosol	95.2	74.38
GSMUA_Achr6P35270_001	Banana	cytosol	94.4	74.21
VIT_04s0008g06220.t01	Wine grape	cytosol	92.8	72.5
VIT_11s0118g00680.t01	Wine grape	cytosol	92.0	71.88
KRH03569	Soybean	cytosol, nucleus	90.4	71.07
KRH37857	Soybean	cytosol	89.6	70.44
KRH20240	Soybean	nucleus	89.6	70.44
PGSC0003DMT400015118	Potato	cytosol	87.2	69.87
Solyc12g042080.1.1	Tomato	nucleus	87.2	68.55
Solyc06g073790.2.1	Tomato	cytosol	86.4	67.92
Solyc06g073800.2.1	Tomato	cytosol, nucleus	86.4	67.92
PGSC0003DMT400013305	Potato	cytosol	85.6	67.3
AT5G23740.1	Thale cress	cytosol	84.0	66.04
EES12457	Sorghum	cytosol	84.0	65.62
AT4G30800.1	Thale cress	cytosol	83.2	65.41
AT3G48930.1	Thale cress	cytosol	83.2	65.0
Os04t0502300-01	Rice	cytosol, plasma membrane, plastid	83.2	65.0
Zm00001d003118_P001	Maize	cytosol	81.6	64.97
Bra009706.1-P	Field mustard	cytosol	82.4	64.78
OQU85305	Sorghum	cytosol	82.4	64.38
Bra029928.1-P	Field mustard	cytosol	81.6	64.15
Bra029381.1-P	Field mustard	cytosol	81.6	64.15
Bra026484.1-P	Field mustard	cytosol	80.8	63.52
TraesCS6D01G203900.1	Wheat	cytosol	80.8	62.73
TraesCS6A01G231200.1	Wheat	cytosol	80.0	62.11
KRH37858	Soybean	endoplasmic reticulum, extracellular	87.2	61.58
PGSC0003DMT400015117	Potato	cytosol	83.2	58.1
GSMUA_Achr4P20370_001	Banana	cytosol	52.8	57.39
KRH75732	Soybean	cytosol, plastid	52.8	55.93
HORVU6Hr1G056610.3	Barley	mitochondrion	79.2	53.8
PGSC0003DMT400015122	Potato	mitochondrion	42.4	52.48
GSMUA_Achr9P09150_001	Banana	cytosol	55.2	49.64
GSMUA_Achr3P13330_001	Banana	plastid	53.6	31.9
Bra018026.1-P	Field mustard	cytosol	70.4	31.43

Protein Annotations

MapMan:17.1.3.1.12	Gene3D:2.40.50.1000	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr7G20890_001	EnsemblPlants:GSMUA_Achr7P20890_001
EnsemblPlants:GSMUA_Achr7T20890_001	UniProt:M0TJC6	InterPro:NA-bd_OB-fold	PFAM:PD001295	PFAM:PF00366	PFAM:PF16205
PANTHER:PTHR10744	PANTHER:PTHR10744:SF18	InterPro:Ribosomal_S11_N	InterPro:Ribosomal_S17/S11	SUPFAM:SSF50249	UniParc:UPI0002967D4B
SEG:seg	:	:	:	:	:

Description

40S ribosomal protein S11 [Source:GMGC_GENE;Acc:GSMUA_Achr7G20890_001]

Coordinates

chr7:+:23846784..23849946

Molecular Weight (calculated)

13607.7 Da

IEP (calculated)

10.821

GRAVY (calculated)

-0.424

Length

125 amino acids

Sequence
(BLAST)

001: MAEQTEKAFL KQPKVFLCSK KSGKGKRPGK GGNRFWKSIG LGFKTPREAI EGTYIDKKCP FTGNVYEKRH SNIPAHISPC FRVKEGDHVI IGQCRPLAKT
101: VTFNVLKVIP AGSTSGGGKK AFAAV

Best Arabidopsis Sequence Match ( AT3G48930.1 )
(BLAST)

001: MAEQTEKAFL KQPKVFLSSK KSGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYVDKKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRD YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHIIIGQCR PLSKTVRFNV LKVIPAGSSS SFGKKAFTGM

Arabidopsis Description

RPS11A40S ribosomal protein S11-1 [Source:UniProtKB/Swiss-Prot;Acc:P16181]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.