CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002339_P001	Maize	plasma membrane	100.0	100.0
Zm00001d026286_P001	Maize	cytosol	100.0	100.0
EES12457	Sorghum	cytosol	90.57	90.0
Os08t0207000-01	Rice	cytosol	30.82	89.09
OQU85305	Sorghum	cytosol	89.31	88.75
GSMUA_Achr3P13340_001	Banana	cytosol	32.7	77.61
GSMUA_Achr4P20380_001	Banana	cytosol	32.7	77.61
TraesCS4D01G276300.1	Wheat	mitochondrion, plastid	43.4	54.76

Protein Annotations

MapMan:17.1.3.1.12	Gene3D:2.40.50.1000	EntrezGene:8072336	UniProt:C5YFQ2	EnsemblPlants:EES11414	ProteinID:EES11414
ProteinID:EES11414.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529
InterPro:NA-bd_OB-fold	PFAM:PD001295	PFAM:PF00366	PFAM:PF16205	PRINTS:PR00973	ScanProsite:PS00056
PANTHER:PTHR10744	PANTHER:PTHR10744:SF18	InterPro:Ribosomal_S11_N	InterPro:Ribosomal_S17/S11	InterPro:Ribosomal_S17_CS	InterPro:Ribosomal_S17_arc-typ
EnsemblPlantsGene:SORBI_3006G213000	SUPFAM:SSF50249	unigene:Sbi.18660	TIGRFAMs:TIGR03630	UniParc:UPI0000134BF4	RefSeq:XP_002447086.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:56167146..56169856

Molecular Weight (calculated)

17690.8 Da

IEP (calculated)

11.284

GRAVY (calculated)

-0.457

Length

159 amino acids

Sequence
(BLAST)

001: MAEQTEKAFL KQPKVFLSSK KSGKGKKPGK GGNRFWKSIG LGFKTPREAI EGTYIDKKCP FTGTVSIRGR IIAGTCHSAK MNRTIIVRRN YLHFVKKYQR
101: YEKRHSNIPA HISPCFRVKE GDHVIIGQCR PLSKTVRFNV VKVIPAGSAA AGKKAFTAA

Best Arabidopsis Sequence Match ( AT5G23740.1 )
(BLAST)

001: MAEQTEKAFL KQPKVFLSSK ISGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYIDSKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRN YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FGKKAFTGV

Arabidopsis Description

RPS11CRPS11-BETA [Source:UniProtKB/TrEMBL;Acc:A0A178UPD3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.