Subcellular Localization
min:
: max
Winner_takes_all: golgi, unclear, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
25769308
unclear: 25769308 nucleus: 28628250 |
msms PMID:
25769308
doi
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID:
28628250
doi
LIMOS, CNRS, Université Blaise Pascal, Aubière, 63173, France., UMR GDEC, INRA, Université Clermont Auvergne, 5 chemin de Beaulieu, Clermont-Ferrand, 63039, France., UMR GQE, INRA, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, 91190, France.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS2D01G421300.1 | Wheat | cytosol | 100.0 | 100.0 |
Os04t0613600-00 | Rice | cytosol | 91.19 | 90.06 |
Os07t0565000-01 | Rice | cytosol | 91.19 | 90.06 |
Os07t0565100-00 | Rice | nucleus | 91.19 | 90.06 |
Os04t0613500-00 | Rice | cytosol | 44.03 | 87.5 |
GSMUA_Achr4P20380_001 | Banana | cytosol | 35.22 | 83.58 |
GSMUA_Achr3P13340_001 | Banana | cytosol | 33.96 | 80.6 |
HORVU2Hr1G099230.8 | Barley | cytosol, mitochondrion | 99.37 | 76.7 |
Protein Annotations
MapMan:17.1.3.1.12 | Gene3D:2.40.50.1000 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:NA-bd_OB-fold | PFAM:PD001295 |
PFAM:PF00366 | PFAM:PF16205 | PRINTS:PR00973 | ScanProsite:PS00056 | PANTHER:PTHR10744 | PANTHER:PTHR10744:SF18 |
InterPro:Ribosomal_S11_N | InterPro:Ribosomal_S17/S11 | InterPro:Ribosomal_S17_CS | InterPro:Ribosomal_S17_arc-typ | SUPFAM:SSF50249 | TIGRFAMs:TIGR03630 |
EnsemblPlantsGene:TraesCS2B01G443000 | EnsemblPlants:TraesCS2B01G443000.1 | : | : | : | : |
Description
No Description!
Coordinates
chr2B:-:636209027..636211198
Molecular Weight (calculated)
17803.0 Da
IEP (calculated)
11.257
GRAVY (calculated)
-0.452
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEQTEKSFL KQPKVFLSTK KADKAKRPGK AGNRFWKSVG LGFKTPREAI DGTYIDKKCP FTGTVAIRGR IIAGTCHSAK MNRTIIVRRN YLHFVKKYQR
101: YEKRHSNIPA HISPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVVPAGTTG GGKKAFIAA
101: YEKRHSNIPA HISPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVVPAGTTG GGKKAFIAA
001: MAEQTEKAFL KQPKVFLSSK ISGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYIDSKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRN YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FGKKAFTGV
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FGKKAFTGV
Arabidopsis Description
RPS11CRPS11-BETA [Source:UniProtKB/TrEMBL;Acc:A0A178UPD3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.