CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 4
cytosol 2
golgi 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52536	Soybean	endoplasmic reticulum	96.76	96.76
KRH61871	Soybean	endoplasmic reticulum	90.56	91.1
KRH52535	Soybean	cytosol, plastid	89.68	90.48
VIT_04s0008g04350.t01	Wine grape	cytosol, plastid	82.3	82.06
Solyc08g067910.2.1	Tomato	plastid	81.42	80.94
PGSC0003DMT400037606	Potato	cytosol, plastid	80.83	80.59
PGSC0003DMT400011584	Potato	cytosol, plastid	77.88	75.0
CDX94818	Canola	cytosol	68.14	68.55
GSMUA_Achr10P...	Banana	cytosol	69.03	68.22
CDY67342	Canola	cytosol	68.44	68.04
CDY47175	Canola	cytosol	68.14	67.54
GSMUA_Achr7P08550_001	Banana	cytosol	68.14	67.54
Bra015036.1-P	Field mustard	cytosol	68.14	67.15
AT3G24350.2	Thale cress	cytosol	71.09	66.76
CDX77428	Canola	cytosol	67.55	66.57
CDX93010	Canola	cytosol	68.73	66.01
GSMUA_Achr6P04790_001	Banana	cytosol	66.37	65.98
CDY66440	Canola	cytosol	68.14	64.53
Zm00001d039614_P001	Maize	plasma membrane	64.01	63.27
Bra001945.1-P	Field mustard	cytosol	68.44	63.22
Bra028370.1-P	Field mustard	cytosol	54.87	62.63
Zm00001d008758_P001	Maize	plasma membrane	63.42	62.5
EES02357	Sorghum	plastid	62.54	62.35
Os01t0179200-01	Rice	plasma membrane	62.83	61.92
TraesCS3A01G119100.1	Wheat	plastid	62.24	61.52
HORVU3Hr1G022030.2	Barley	plastid	61.95	61.4
TraesCS3B01G138100.1	Wheat	plastid	61.95	61.4
TraesCS3D01G121000.2	Wheat	plastid	61.65	60.93
KRH14969	Soybean	cytosol	36.87	51.65
KRH15025	Soybean	cytosol	50.44	51.35
KRH73168	Soybean	cytosol	50.44	51.04

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100778493	MapMan:22.7.1.3	EMBL:ACUP02002196	EnsemblPlantsGene:GLYMA_04G072800	GO:GO:0000139
GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006886
GO:GO:0006888	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	GO:GO:0048278	UniProt:I1JUJ8	InterPro:IPR000727
EnsemblPlants:KRH61874	ProteinID:KRH61874	ProteinID:KRH61874.1	PFAM:PF05739	PFAM:PF11416	ScanProsite:PS00914
PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF206	SMART:SM00397	InterPro:SNARE	SUPFAM:SSF47661
InterPro:Syntaxin-5_N	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0001CA9FF2	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:6073460..6077876

Molecular Weight (calculated)

37529.3 Da

IEP (calculated)

9.417

GRAVY (calculated)

-0.427

Length

339 amino acids

Sequence
(BLAST)

001: MHVKSAQSSF RDRTQEFHSI TERLKKSGSG PNGPSSSSTS SRSEEQRSAI ANQSEFNRRA SKIGYGIHQT SQKLAKLAKL AKRTSVFDDP TMEIQELTGV
101: IKQDITALNS AVVDLQLVCS SRNETGNVSA DTSSHSSTVV DDLKTRLMST TKEFKDVLTM RTENMKVHEN RRQLFSSSAS KDSANPFIRQ RPLAARAAAS
201: TSSAPALPWA NGSPSSSQAF PKKQVDGESQ PLLQQQQQQQ EVVPLQDSYM QSRAEALQNV ESTIHELSNI FNQLATLVSQ QGEIAIRIDE NMDDTLANVE
301: GAQGALLKYL NSISSNRWLM IKIFFVLIFF LMVFLFFVA

Best Arabidopsis Sequence Match ( AT3G24350.1 )
(BLAST)

001: MSARHGQSSY RDRSDEFFKI VETLRRSIAP APAANNVPYG NNRNDGARRE DLINKSEFNK RASHIGLAIN QTSQKLSKLA KLAKRTSVFD DPTQEIQELT
101: VVIKQEISAL NSALVDLQLF RSSQNDEGNN SRDRDKSTHS ATVVDDLKYR LMDTTKEFKD VLTMRTENMK VHESRRQLFS SNASKESTNP FVRQRPLAAK
201: AAASESVPLP WANGSSSSSS QLVPWKPGEG ESSPLLQQSQ QQQQQQQQQM VPLQDTYMQG RAEALHTVES TIHELSSIFT QLATMVSQQG EIAIRIDQNM
301: EDTLANVEGA QSQLARYLNS ISSNRWLMMK IFFVLIAFLM IFLFFVA

Arabidopsis Description

SYP32Syntaxin of plants 32 [Source:UniProtKB/TrEMBL;Acc:F4J6K6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.