CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67342	Canola	cytosol	97.66	97.95
Bra028370.1-P	Field mustard	cytosol	84.21	96.97
CDX94818	Canola	cytosol	89.18	90.5
CDX77428	Canola	cytosol	88.6	88.08
CDX93010	Canola	cytosol	88.89	86.12
CDY66440	Canola	cytosol	89.18	85.2
AT3G24350.2	Thale cress	cytosol	79.24	75.07
VIT_11s0016g04370.t01	Wine grape	plastid	68.42	69.23
KRH52536	Soybean	endoplasmic reticulum	67.84	68.44
KRH61874	Soybean	endoplasmic reticulum	67.54	68.14
KRH61871	Soybean	endoplasmic reticulum	66.96	67.95
KRH52535	Soybean	cytosol, plastid	65.79	66.96
Solyc08g067910.2.1	Tomato	plastid	64.04	64.22
PGSC0003DMT400037606	Potato	cytosol, plastid	63.16	63.53
GSMUA_Achr10P...	Banana	cytosol	61.4	61.22
CDX70131	Canola	cytosol	11.4	60.94
GSMUA_Achr7P08550_001	Banana	cytosol	59.06	59.06
PGSC0003DMT400011584	Potato	cytosol, plastid	60.23	58.52
GSMUA_Achr6P04790_001	Banana	cytosol	57.02	57.18
Os01t0179200-01	Rice	plasma membrane	55.85	55.52
HORVU3Hr1G022030.2	Barley	plastid	55.26	55.26
TraesCS3B01G138100.1	Wheat	plastid	55.26	55.26
TraesCS3A01G119100.1	Wheat	plastid	55.26	55.1
TraesCS3D01G121000.2	Wheat	plastid	54.68	54.52
EES02357	Sorghum	plastid	53.51	53.82
Zm00001d008758_P001	Maize	plasma membrane	54.09	53.78
Zm00001d039614_P001	Maize	plasma membrane	53.8	53.64
CDY14956	Canola	cytosol	16.96	52.25
CDY11339	Canola	cytosol, plastid	45.32	45.59
CDX80972	Canola	plastid	45.32	45.45

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.1.3	GO:A0A078I8D4	UniProt:A0A078I8D4	EnsemblPlants:CDY47175	ProteinID:CDY47175
ProteinID:CDY47175.1	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0061025	EnsemblPlantsGene:GSBRNA2T00086874001
InterPro:IPR000727	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF206
SMART:SM00397	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI0004EEF9E0	SEG:seg	:	:	:	:

Description

BnaA01g23010DBnaA01g23010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I8D4]

Coordinates

chrLK032701:-:151865..153892

Molecular Weight (calculated)

38117.1 Da

IEP (calculated)

9.653

GRAVY (calculated)

-0.502

Length

342 amino acids

Sequence
(BLAST)

001: MQARHGQSSY RDRTDEFFGV VESRRRSIAP AAANNVPYGG GGRREDPRSA AANQSEFSKR ASLIGLAIHQ TSQKLSKLAQ LAKRSSVFDD PTREIQELTV
101: VIKQEISGLN GALLDLQAVR NSHNDESNIS RDTTTHSATV VDDLKNRLMD TTKEFKDVLT LRTENMKIQE DRMKKFSKIS SKESANPFVR QRPLASKPSP
201: SQPAPLPWAN GSSSSSSSSQ IVPSRQGEAE SSPLLQQSQQ QQQQMVPLQD TYMQSRAEAL HNVESTIHEL GNIFTQLATM VSQQGEIAIR IDQNMEDTLA
301: NVEGAQSQLA RYLNSISSNR WLMIKIFFVL IAFLMVFLFF VA

Best Arabidopsis Sequence Match ( AT3G24350.1 )
(BLAST)

001: MSARHGQSSY RDRSDEFFKI VETLRRSIAP APAANNVPYG NNRNDGARRE DLINKSEFNK RASHIGLAIN QTSQKLSKLA KLAKRTSVFD DPTQEIQELT
101: VVIKQEISAL NSALVDLQLF RSSQNDEGNN SRDRDKSTHS ATVVDDLKYR LMDTTKEFKD VLTMRTENMK VHESRRQLFS SNASKESTNP FVRQRPLAAK
201: AAASESVPLP WANGSSSSSS QLVPWKPGEG ESSPLLQQSQ QQQQQQQQQM VPLQDTYMQG RAEALHTVES TIHELSSIFT QLATMVSQQG EIAIRIDQNM
301: EDTLANVEGA QSQLARYLNS ISSNRWLMMK IFFVLIAFLM IFLFFVA

Arabidopsis Description

SYP32Syntaxin of plants 32 [Source:UniProtKB/TrEMBL;Acc:F4J6K6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.