Factsheet for Bra028370.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47175	Canola	cytosol	96.97	84.21
CDY67342	Canola	cytosol	95.62	83.28
Bra015036.1-P	Field mustard	cytosol	84.51	72.97
Bra001945.1-P	Field mustard	cytosol	85.52	69.21
AT3G24350.2	Thale cress	cytosol	74.41	61.22
KRH52536	Soybean	endoplasmic reticulum	63.3	55.46
VIT_11s0016g04370.t01	Wine grape	plastid	62.96	55.33
KRH61874	Soybean	endoplasmic reticulum	62.63	54.87
KRH61871	Soybean	endoplasmic reticulum	61.95	54.6
KRH52535	Soybean	cytosol, plastid	61.28	54.17
GSMUA_Achr10P...	Banana	cytosol	61.28	53.06
Solyc08g067910.2.1	Tomato	plastid	59.26	51.61
GSMUA_Achr7P08550_001	Banana	cytosol	59.26	51.46
PGSC0003DMT400037606	Potato	cytosol, plastid	58.25	50.88
GSMUA_Achr6P04790_001	Banana	cytosol	57.24	49.85
PGSC0003DMT400011584	Potato	cytosol, plastid	56.57	47.73
Os01t0179200-01	Rice	plasma membrane	54.88	47.38
TraesCS3B01G138100.1	Wheat	plastid	54.55	47.37
HORVU3Hr1G022030.2	Barley	plastid	54.55	47.37
TraesCS3A01G119100.1	Wheat	plastid	54.55	47.23
TraesCS3D01G121000.2	Wheat	plastid	53.87	46.65
Zm00001d008758_P001	Maize	plasma membrane	53.2	45.93
EES02357	Sorghum	plastid	52.53	45.88
Zm00001d039614_P001	Maize	plasma membrane	52.86	45.77
Bra005866.1-P	Field mustard	cytosol, plastid	41.41	36.18

Protein Annotations

EnsemblPlants:Bra028370.1	EnsemblPlants:Bra028370.1-P	EnsemblPlantsGene:Bra028370	Gene3D:1.20.58.70	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	InterPro:IPR000727	InterPro:SNARE	InterPro:T_SNARE_dom
PANTHER:PTHR19957	PANTHER:PTHR19957:SF206	PFscan:PS50192	SEG:seg	SUPFAM:SSF47661	UniParc:UPI00025453E1
UniProt:M4EHV5	MapMan:22.7.1.3	:	:	:	:

Description

AT3G24350 (E=5e-101) SYP32, ATSYP32 | SYP32 (SYNTAXIN OF PLANTS 32); SNAP receptor

Coordinates

chrA01:-:18043685..18044891

Molecular Weight (calculated)

32924.7 Da

IEP (calculated)

10.204

GRAVY (calculated)

-0.712

Length

297 amino acids

Sequence
(BLAST)

001: MQARHGQSSY RDRTDEFFGV VESRRRSIAP AAANNVPYGG GGGRREDPRS AAANQSEFSK RASLIGLAIH QTSQKLSKLA QLAKRSSVFD DPTREIQELT
101: VVIKQEISGL NGALLDLQAV RNSHNDESNI SRDTTTHSAT VVDDLKNRLM DTTKEFKDVL TLRTENMKIQ EDRMKKFSKI SSKESANPFV RQRPLASKPS
201: PSQPAPLPWA NGSSSSSSQI VPSRQGEAES SPLLQQSQQQ QQQMVPLQDT YMQSRAEALH NVESTIHELG NIFTQLATMV SQQGEIAIRF LKTKTMS

Best Arabidopsis Sequence Match ( AT3G24350.1 )
(BLAST)

001: MSARHGQSSY RDRSDEFFKI VETLRRSIAP APAANNVPYG NNRNDGARRE DLINKSEFNK RASHIGLAIN QTSQKLSKLA KLAKRTSVFD DPTQEIQELT
101: VVIKQEISAL NSALVDLQLF RSSQNDEGNN SRDRDKSTHS ATVVDDLKYR LMDTTKEFKD VLTMRTENMK VHESRRQLFS SNASKESTNP FVRQRPLAAK
201: AAASESVPLP WANGSSSSSS QLVPWKPGEG ESSPLLQQSQ QQQQQQQQQM VPLQDTYMQG RAEALHTVES TIHELSSIFT QLATMVSQQG EIAIRIDQNM
301: EDTLANVEGA QSQLARYLNS ISSNRWLMMK IFFVLIAFLM IFLFFVA

Arabidopsis Description

SYP32Syntaxin of plants 32 [Source:UniProtKB/TrEMBL;Acc:F4J6K6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.