Factsheet for PGSC0003DMT400011584

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, golgi, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037606	Potato	cytosol, plastid	92.33	95.59
Solyc08g067910.2.1	Tomato	plastid	89.77	92.67
VIT_04s0008g04350.t01	Wine grape	cytosol, plastid	76.42	79.12
KRH52536	Soybean	endoplasmic reticulum	75.28	78.17
KRH61874	Soybean	endoplasmic reticulum	75.0	77.88
KRH61871	Soybean	endoplasmic reticulum	74.43	77.74
KRH52535	Soybean	cytosol, plastid	73.86	77.38
GSMUA_Achr7P08550_001	Banana	cytosol	62.78	64.62
GSMUA_Achr10P...	Banana	cytosol	61.93	63.56
GSMUA_Achr6P04790_001	Banana	cytosol	61.08	63.05
CDX94818	Canola	cytosol	59.94	62.61
Zm00001d039614_P001	Maize	plasma membrane	60.23	61.81
EES02357	Sorghum	plastid	59.66	61.76
Os01t0179200-01	Rice	plasma membrane	60.23	61.63
Bra015036.1-P	Field mustard	cytosol	59.38	60.76
Zm00001d008758_P001	Maize	plasma membrane	59.09	60.47
CDY67342	Canola	cytosol	58.52	60.41
TraesCS3A01G119100.1	Wheat	plastid	58.81	60.35
HORVU3Hr1G022030.2	Barley	plastid	58.52	60.23
TraesCS3B01G138100.1	Wheat	plastid	58.52	60.23
CDY47175	Canola	cytosol	58.52	60.23
CDX77428	Canola	cytosol	58.81	60.17
TraesCS3D01G121000.2	Wheat	plastid	58.52	60.06
CDX93010	Canola	cytosol	59.94	59.77
AT3G24350.2	Thale cress	cytosol	60.23	58.73
CDY66440	Canola	cytosol	59.66	58.66
Bra001945.1-P	Field mustard	cytosol	60.23	57.77
Bra028370.1-P	Field mustard	cytosol	47.73	56.57
PGSC0003DMT400047329	Potato	cytosol, plastid	45.45	47.76

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:102583333	MapMan:22.7.1.3	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:IPR000727	UniProt:M0ZZS7	PFAM:PF05739
PFAM:PF11416	EnsemblPlantsGene:PGSC0003DMG400004557	PGSC:PGSC0003DMG400004557	EnsemblPlants:PGSC0003DMT400011584	PFscan:PS50192	PANTHER:PTHR19957
PANTHER:PTHR19957:SF206	SMART:SM00397	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin-5_N	TMHMM:TMhelix
InterPro:T_SNARE_dom	UniParc:UPI00029597C0	RefSeq:XP_006356621.1	SEG:seg	:	:

Description

Syntaxin [Source:PGSC_GENE;Acc:PGSC0003DMG400004557]

Coordinates

chr8:-:42508808..42516979

Molecular Weight (calculated)

39222.2 Da

IEP (calculated)

7.988

GRAVY (calculated)

-0.445

Length

352 amino acids

Sequence
(BLAST)

001: MPVKVASASF RDRTQEFQSI AERLKKSFSS FQNGPISSST SSGSRSEEQR TTIAMQSEFN RRASKIGFGI HQTSQKLAKL AKLAKRTSDF DDPTTEIQEL
101: TAVINQDITA LNSAVVDLQL HSNSRNESGN SDTTSHSTTV VDGLKNRLMT ATKEFKEVLT MRTENMKVHE NRRQMISSST TKEASNPFMR QRPLAGFHWV
201: CCCCPLASRN TAITSASPPP WANDSASSSQ LFPRKQGDGN TQPLLQDQQQ QQQQIVPLQD SYMQSRAEAF QNAESTIHEL GSIFNQLATL VSEQGEVAVR
301: IDENVDDALT NVEGAQGALL KYLNSISSNR WLMIKIYSVL IFYLMIFLFF VA

Best Arabidopsis Sequence Match ( AT3G24350.1 )
(BLAST)

001: MSARHGQSSY RDRSDEFFKI VETLRRSIAP APAANNVPYG NNRNDGARRE DLINKSEFNK RASHIGLAIN QTSQKLSKLA KLAKRTSVFD DPTQEIQELT
101: VVIKQEISAL NSALVDLQLF RSSQNDEGNN SRDRDKSTHS ATVVDDLKYR LMDTTKEFKD VLTMRTENMK VHESRRQLFS SNASKESTNP FVRQRPLAAK
201: AAASESVPLP WANGSSSSSS QLVPWKPGEG ESSPLLQQSQ QQQQQQQQQM VPLQDTYMQG RAEALHTVES TIHELSSIFT QLATMVSQQG EIAIRIDQNM
301: EDTLANVEGA QSQLARYLNS ISSNRWLMMK IFFVLIAFLM IFLFFVA

Arabidopsis Description

SYP32Syntaxin of plants 32 [Source:UniProtKB/TrEMBL;Acc:F4J6K6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.