Factsheet for Solyc08g067910.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, golgi, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	golgi
YLoc:	cytosol

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037606	Potato	cytosol, plastid	97.07	97.35
PGSC0003DMT400011584	Potato	cytosol, plastid	92.67	89.77
VIT_04s0008g04350.t01	Wine grape	cytosol, plastid	83.28	83.53
KRH61874	Soybean	endoplasmic reticulum	80.94	81.42
KRH52536	Soybean	endoplasmic reticulum	80.65	81.12
KRH61871	Soybean	endoplasmic reticulum	80.06	81.01
KRH52535	Soybean	cytosol, plastid	79.77	80.95
GSMUA_Achr7P08550_001	Banana	cytosol	67.74	67.54
CDX94818	Canola	cytosol	65.69	66.47
GSMUA_Achr10P...	Banana	cytosol	66.57	66.18
GSMUA_Achr6P04790_001	Banana	cytosol	65.1	65.1
Bra015036.1-P	Field mustard	cytosol	64.81	64.24
CDY67342	Canola	cytosol	64.22	64.22
CDY47175	Canola	cytosol	64.22	64.04
Os01t0179200-01	Rice	plasma membrane	64.52	63.95
CDX77428	Canola	cytosol	64.22	63.66
EES02357	Sorghum	plastid	63.34	63.53
CDX93010	Canola	cytosol	65.69	63.46
Zm00001d039614_P001	Maize	plasma membrane	63.64	63.27
AT3G24350.2	Thale cress	cytosol	66.28	62.6
CDY66440	Canola	cytosol	65.4	62.29
Zm00001d008758_P001	Maize	plasma membrane	62.76	62.21
TraesCS3A01G119100.1	Wheat	plastid	62.46	62.1
HORVU3Hr1G022030.2	Barley	plastid	62.17	61.99
TraesCS3B01G138100.1	Wheat	plastid	62.17	61.99
TraesCS3D01G121000.2	Wheat	plastid	62.17	61.81
Bra001945.1-P	Field mustard	cytosol	65.98	61.31
Bra028370.1-P	Field mustard	cytosol	51.61	59.26
Solyc07g054140.2.1	Tomato	cytosol, plastid	45.75	49.06

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.1.3	GO:GO:0000139	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0006906	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201
GO:GO:0048278	InterPro:IPR000727	UniProt:K4CM15	PFAM:PF05739	PFAM:PF11416	ScanProsite:PS00914
PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF206	SMART:SM00397	InterPro:SNARE	SUPFAM:SSF47661
EnsemblPlantsGene:Solyc08g067910.2	EnsemblPlants:Solyc08g067910.2.1	InterPro:Syntaxin-5_N	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI000276C497	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:-:56949561..56958213

Molecular Weight (calculated)

38110.0 Da

IEP (calculated)

9.457

GRAVY (calculated)

-0.488

Length

341 amino acids

Sequence
(BLAST)

001: MPVKVASASL RDRTQEFQSI AERLKKSFSS VQNGSISTST SSGSRSEEQR TTIAMQSEFN RRASKIGFGI HQTSQKLAKL AKLAKRTSVF DDPTTEIQEL
101: TAVIKQDITA LNSAVVDLQL HSNARNESGN SDTTSHSTTV VDDLKNRLMT ATKEFKEVLT MRTENMKVHE NRRQMFSSST SKEASNPFMR QRPLASRNTA
201: STSASPPPWA NDSPSSSQLF PRKQGDGDTQ PLLQDQQQQQ QQQIVPLQDS YMQSRAEALQ NVESTIHELG SIFNQLATLV SQQGEVAIRI DENMDDTLTN
301: VEGAQGALLK YLNSISSNRW LMIKIFFVLI FFLMIFLFFV A

Best Arabidopsis Sequence Match ( AT3G24350.1 )
(BLAST)

001: MSARHGQSSY RDRSDEFFKI VETLRRSIAP APAANNVPYG NNRNDGARRE DLINKSEFNK RASHIGLAIN QTSQKLSKLA KLAKRTSVFD DPTQEIQELT
101: VVIKQEISAL NSALVDLQLF RSSQNDEGNN SRDRDKSTHS ATVVDDLKYR LMDTTKEFKD VLTMRTENMK VHESRRQLFS SNASKESTNP FVRQRPLAAK
201: AAASESVPLP WANGSSSSSS QLVPWKPGEG ESSPLLQQSQ QQQQQQQQQM VPLQDTYMQG RAEALHTVES TIHELSSIFT QLATMVSQQG EIAIRIDQNM
301: EDTLANVEGA QSQLARYLNS ISSNRWLMMK IFFVLIAFLM IFLFFVA

Arabidopsis Description

SYP32Syntaxin of plants 32 [Source:UniProtKB/TrEMBL;Acc:F4J6K6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.