Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 1
- cytosol 2
- golgi 1
- plastid 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES02357 | Sorghum | plastid | 87.5 | 88.53 |
| HORVU3Hr1G022030.2 | Barley | plastid | 86.63 | 87.13 |
| TraesCS3B01G138100.1 | Wheat | plastid | 86.34 | 86.84 |
| Zm00001d039614_P001 | Maize | plasma membrane | 85.76 | 86.01 |
| TraesCS3A01G119100.1 | Wheat | plastid | 85.76 | 86.01 |
| Zm00001d008758_P001 | Maize | plasma membrane | 85.76 | 85.76 |
| TraesCS3D01G121000.2 | Wheat | plastid | 85.17 | 85.42 |
| GSMUA_Achr7P08550_001 | Banana | cytosol | 75.58 | 76.02 |
| GSMUA_Achr6P04790_001 | Banana | cytosol | 73.55 | 74.19 |
| GSMUA_Achr10P... | Banana | cytosol | 73.84 | 74.05 |
| VIT_11s0016g04370.t01 | Wine grape | plastid | 64.53 | 65.68 |
| KRH61871 | Soybean | endoplasmic reticulum | 64.24 | 65.58 |
| KRH52535 | Soybean | cytosol, plastid | 63.95 | 65.48 |
| VIT_04s0008g04350.t01 | Wine grape | cytosol, plastid | 63.95 | 64.71 |
| Solyc08g067910.2.1 | Tomato | plastid | 63.95 | 64.52 |
| KRH52536 | Soybean | endoplasmic reticulum | 63.08 | 64.01 |
| PGSC0003DMT400037606 | Potato | cytosol, plastid | 62.5 | 63.24 |
| KRH61874 | Soybean | endoplasmic reticulum | 61.92 | 62.83 |
| PGSC0003DMT400011584 | Potato | cytosol, plastid | 61.63 | 60.23 |
| CDX94818 | Canola | cytosol | 56.98 | 58.16 |
| Bra015036.1-P | Field mustard | cytosol | 56.1 | 56.1 |
| CDY47175 | Canola | cytosol | 55.52 | 55.85 |
| CDX77428 | Canola | cytosol | 55.81 | 55.81 |
| CDX93010 | Canola | cytosol | 56.98 | 55.52 |
| CDY67342 | Canola | cytosol | 54.65 | 55.13 |
| Bra028370.1-P | Field mustard | cytosol | 47.38 | 54.88 |
| CDY66440 | Canola | cytosol | 56.1 | 53.91 |
| AT3G24350.2 | Thale cress | cytosol | 56.4 | 53.74 |
| Bra001945.1-P | Field mustard | cytosol | 57.27 | 53.68 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:22.7.1.3 | EntrezGene:4323876 | EMBL:AK106425 | ProteinID:BAB07966.1 | ProteinID:BAB63479.1 |
| ProteinID:BAF04111.1 | ProteinID:BAS70709.1 | ncoils:Coil | GO:GO:0000139 | GO:GO:0000149 | GO:GO:0003674 |
| GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005794 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006888 | GO:GO:0006906 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 |
| GO:GO:0031201 | GO:GO:0048278 | GO:GO:0061025 | InterPro:IPR000727 | EnsemblPlantsGene:Os01g0179200 | EnsemblPlants:Os01t0179200-01 |
| PFAM:PF05739 | PFAM:PF11416 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF206 |
| UniProt:Q9LGF8 | SMART:SM00397 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin-5_N | InterPro:Syntaxin/epimorphin_CS |
| TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI00000AB99B | RefSeq:XP_015617756.1 | SEG:seg | : |
Description
Syntaxin, N-terminal domain containing protein. (Os01t0179200-01)
Coordinates
chr1:+:4118041..4122224
Molecular Weight (calculated)
37593.4 Da
IEP (calculated)
9.734
GRAVY (calculated)
-0.352
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPGRPAPAS FRDRTNEFRA AVESAARYAS SSAAAAPSSS SGGGVGGPLD VSRGAASAHS EFNRRASKIG LGIHQTSQKL ARLAKLAKRT SVFDDPTVEI
101: QELTAVIKKD ITALNSAVVD LQVLCNSQNE SGNLSKDTTN HSTTVVDNLK NRLMSATKEF KEVLTMRTEN LKVHENRRQM FSSSAANNAS NPFVRQRPLV
201: TRDGPESSVP PAPWASDSAT TPLFQRKKTN GDHGASSSSS QPFMQQQLVQ QDSYMQSRAE ALQNVESTIH ELSNIFTQLA TMVSQQGELA IRIDENMDDT
301: LANVEGAQGQ LLKYLNSISS NRWLMMKIFF VLMVFLMIFI FFVA
101: QELTAVIKKD ITALNSAVVD LQVLCNSQNE SGNLSKDTTN HSTTVVDNLK NRLMSATKEF KEVLTMRTEN LKVHENRRQM FSSSAANNAS NPFVRQRPLV
201: TRDGPESSVP PAPWASDSAT TPLFQRKKTN GDHGASSSSS QPFMQQQLVQ QDSYMQSRAE ALQNVESTIH ELSNIFTQLA TMVSQQGELA IRIDENMDDT
301: LANVEGAQGQ LLKYLNSISS NRWLMMKIFF VLMVFLMIFI FFVA
001: MSARHGQSSY RDRSDEFFKI VETLRRSIAP APAANNVPYG NNRNDGARRE DLINKSEFNK RASHIGLAIN QTSQKLSKLA KLAKRTSVFD DPTQEIQELT
101: VVIKQEISAL NSALVDLQLF RSSQNDEGNN SRDRDKSTHS ATVVDDLKYR LMDTTKEFKD VLTMRTENMK VHESRRQLFS SNASKESTNP FVRQRPLAAK
201: AAASESVPLP WANGSSSSSS QLVPWKPGEG ESSPLLQQSQ QQQQQQQQQM VPLQDTYMQG RAEALHTVES TIHELSSIFT QLATMVSQQG EIAIRIDQNM
301: EDTLANVEGA QSQLARYLNS ISSNRWLMMK IFFVLIAFLM IFLFFVA
101: VVIKQEISAL NSALVDLQLF RSSQNDEGNN SRDRDKSTHS ATVVDDLKYR LMDTTKEFKD VLTMRTENMK VHESRRQLFS SNASKESTNP FVRQRPLAAK
201: AAASESVPLP WANGSSSSSS QLVPWKPGEG ESSPLLQQSQ QQQQQQQQQM VPLQDTYMQG RAEALHTVES TIHELSSIFT QLATMVSQQG EIAIRIDQNM
301: EDTLANVEGA QSQLARYLNS ISSNRWLMMK IFFVLIAFLM IFLFFVA
Arabidopsis Description
SYP32Syntaxin of plants 32 [Source:UniProtKB/TrEMBL;Acc:F4J6K6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.