CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 1
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039614_P001	Maize	plasma membrane	93.53	92.71
Zm00001d008758_P001	Maize	plasma membrane	92.65	91.57
Os01t0179200-01	Rice	plasma membrane	88.53	87.5
HORVU3Hr1G022030.2	Barley	plastid	86.18	85.67
TraesCS3B01G138100.1	Wheat	plastid	85.88	85.38
TraesCS3A01G119100.1	Wheat	plastid	85.29	84.55
TraesCS3D01G121000.2	Wheat	plastid	84.71	83.97
GSMUA_Achr7P08550_001	Banana	cytosol	75.29	74.85
GSMUA_Achr10P...	Banana	cytosol	74.12	73.47
GSMUA_Achr6P04790_001	Banana	cytosol	72.06	71.85
VIT_11s0016g04370.t01	Wine grape	plastid	64.12	64.5
VIT_04s0008g04350.t01	Wine grape	cytosol, plastid	63.82	63.82
KRH61871	Soybean	endoplasmic reticulum	63.24	63.8
KRH52536	Soybean	endoplasmic reticulum	63.53	63.72
KRH52535	Soybean	cytosol, plastid	62.65	63.39
Solyc08g067910.2.1	Tomato	plastid	63.53	63.34
PGSC0003DMT400037606	Potato	cytosol, plastid	62.65	62.65
KRH61874	Soybean	endoplasmic reticulum	62.35	62.54
PGSC0003DMT400011584	Potato	cytosol, plastid	61.76	59.66
CDX94818	Canola	cytosol	55.59	56.08
Bra015036.1-P	Field mustard	cytosol	55.0	54.36
CDX77428	Canola	cytosol	54.71	54.07
CDX93010	Canola	cytosol	55.88	53.82
CDY47175	Canola	cytosol	53.82	53.51
CDY67342	Canola	cytosol	52.94	52.79
AT3G24350.2	Thale cress	cytosol	55.88	52.63
Bra028370.1-P	Field mustard	cytosol	45.88	52.53
CDY66440	Canola	cytosol	55.0	52.23
Bra001945.1-P	Field mustard	cytosol	55.88	51.77

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.1.3	EntrezGene:8056520	UniProt:C5XMQ4	ncoils:Coil	EnsemblPlants:EES02357
ProteinID:EES02357	ProteinID:EES02357.1	GO:GO:0000139	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0006906	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201
GO:GO:0048278	InterPro:IPR000727	PFAM:PF00804	PFAM:PF05739	PFAM:PF11416	ScanProsite:PS00914
PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF206	SMART:SM00397	InterPro:SNARE	EnsemblPlantsGene:SORBI_3003G043400
SUPFAM:SSF47661	unigene:Sbi.16195	InterPro:Syntaxin-5_N	InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N	TMHMM:TMhelix
InterPro:T_SNARE_dom	UniParc:UPI0001A8503D	RefSeq:XP_002457237.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:4009737..4014747

Molecular Weight (calculated)

37459.2 Da

IEP (calculated)

9.525

GRAVY (calculated)

-0.393

Length

340 amino acids

Sequence
(BLAST)

001: MNPTRPAQAS FRDRTNEFRA AVESARRQSS APAAASSSST GPLDGLMAAT SARSEFNNRA SKIGLGIHQT SQKLSRLAKL AKRTSVFDDP TVEIQELTAV
101: IKKDITALNT AVVDLQAICN SQNESGSLSK DTTNHSTTIV DNLKNRLMSA TKEFKEVLTM RTENLKVHEN RRQMFSSSAA NDASNPFIRQ RPLVARDPSE
201: SSVPPAPWAS DSASTPLFQR KKTNGDHGAS SSSSQPFAQQ QQLAVQQDSY MQSRAEALQN VESTIHELSN IFTQLATMVS QQGELAIRID DNMDDTLTNV
301: EGAQGQLLKY LNSISSNRWL MMKIFFVLMV FLMIFIFFVA

Best Arabidopsis Sequence Match ( AT3G24350.1 )
(BLAST)

001: MSARHGQSSY RDRSDEFFKI VETLRRSIAP APAANNVPYG NNRNDGARRE DLINKSEFNK RASHIGLAIN QTSQKLSKLA KLAKRTSVFD DPTQEIQELT
101: VVIKQEISAL NSALVDLQLF RSSQNDEGNN SRDRDKSTHS ATVVDDLKYR LMDTTKEFKD VLTMRTENMK VHESRRQLFS SNASKESTNP FVRQRPLAAK
201: AAASESVPLP WANGSSSSSS QLVPWKPGEG ESSPLLQQSQ QQQQQQQQQM VPLQDTYMQG RAEALHTVES TIHELSSIFT QLATMVSQQG EIAIRIDQNM
301: EDTLANVEGA QSQLARYLNS ISSNRWLMMK IFFVLIAFLM IFLFFVA

Arabidopsis Description

SYP32Syntaxin of plants 32 [Source:UniProtKB/TrEMBL;Acc:F4J6K6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.