CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93010	Canola	cytosol	97.33	92.92
CDX77428	Canola	cytosol	92.58	90.7
CDY47175	Canola	cytosol	90.5	89.18
CDY67342	Canola	cytosol	89.61	88.56
CDY66440	Canola	cytosol	92.88	87.43
AT3G24350.2	Thale cress	cytosol	80.71	75.35
VIT_11s0016g04370.t01	Wine grape	plastid	69.73	69.53
KRH61871	Soybean	endoplasmic reticulum	68.55	68.55
KRH52536	Soybean	endoplasmic reticulum	68.84	68.44
KRH61874	Soybean	endoplasmic reticulum	68.55	68.14
KRH52535	Soybean	cytosol, plastid	67.06	67.26
Solyc08g067910.2.1	Tomato	plastid	66.47	65.69
PGSC0003DMT400037606	Potato	cytosol, plastid	65.58	65.0
GSMUA_Achr10P...	Banana	cytosol	62.61	61.52
CDX70131	Canola	cytosol	11.57	60.94
PGSC0003DMT400011584	Potato	cytosol, plastid	62.61	59.94
GSMUA_Achr7P08550_001	Banana	cytosol	60.53	59.65
GSMUA_Achr6P04790_001	Banana	cytosol	59.35	58.65
TraesCS3B01G138100.1	Wheat	plastid	58.16	57.31
HORVU3Hr1G022030.2	Barley	plastid	58.16	57.31
TraesCS3A01G119100.1	Wheat	plastid	58.16	57.14
Os01t0179200-01	Rice	plasma membrane	58.16	56.98
TraesCS3D01G121000.2	Wheat	plastid	57.57	56.56
EES02357	Sorghum	plastid	56.08	55.59
Zm00001d039614_P001	Maize	plasma membrane	56.38	55.39
Zm00001d008758_P001	Maize	plasma membrane	56.38	55.23
CDY14956	Canola	cytosol	17.51	53.15
CDY11339	Canola	cytosol, plastid	46.88	46.47
CDX80972	Canola	plastid	46.88	46.33

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.1.3	GO:A0A078E5W8	EnsemblPlants:CDX94818	ProteinID:CDX94818	ProteinID:CDX94818.1
GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016192
GO:GO:0061025	EnsemblPlantsGene:GSBRNA2T00158308001	InterPro:IPR000727	PFAM:PF05739	PFAM:PF11416	ScanProsite:PS00914
PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF206	SMART:SM00397	InterPro:SNARE	SUPFAM:SSF47661
InterPro:Syntaxin-5_N	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0004EE6642	SEG:seg

Description

BnaC03g43700D

Coordinates

chrLK031885:-:225420..227544

Molecular Weight (calculated)

37938.0 Da

IEP (calculated)

9.939

GRAVY (calculated)

-0.509

Length

337 amino acids

Sequence
(BLAST)

001: MQARHGHSSY RDRTDEFFGI VETLRRSIAP AAANNVPYGG GRREDPRSAA VMQSEFNRRA SVIGLAIHQT SQKLSKLAQL AKRSSVFDDP TREIGELTAV
101: IKQEISGLNT ALIDLQAVRN SHNDERNISR DTTTHSATVV DDLKNRLMDT TKEFKDVLTL RTENMKIHEN RRQRFTNNPS KESTNPFVRQ RPLASKPAPS
201: QPAPLPWANG SSSSSSQLVP RRQGEAESSP LLQRSQQQQM VPLQDTYMES RAEALHNVES TIHELSNIFT QLATMVSQQG EIAIRIDQNM EDTLANVEGA
301: QSQLARYLNS ISSNRWLMIK IFFVLIAFLM VFLFFVA

Best Arabidopsis Sequence Match ( AT3G24350.1 )
(BLAST)

001: MSARHGQSSY RDRSDEFFKI VETLRRSIAP APAANNVPYG NNRNDGARRE DLINKSEFNK RASHIGLAIN QTSQKLSKLA KLAKRTSVFD DPTQEIQELT
101: VVIKQEISAL NSALVDLQLF RSSQNDEGNN SRDRDKSTHS ATVVDDLKYR LMDTTKEFKD VLTMRTENMK VHESRRQLFS SNASKESTNP FVRQRPLAAK
201: AAASESVPLP WANGSSSSSS QLVPWKPGEG ESSPLLQQSQ QQQQQQQQQM VPLQDTYMQG RAEALHTVES TIHELSSIFT QLATMVSQQG EIAIRIDQNM
301: EDTLANVEGA QSQLARYLNS ISSNRWLMMK IFFVLIAFLM IFLFFVA

Arabidopsis Description

SYP32Syntaxin of plants 32 [Source:UniProtKB/TrEMBL;Acc:F4J6K6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.