Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- cytosol 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005866.1-P | Field mustard | cytosol, plastid | 98.24 | 98.24 |
| CDX80972 | Canola | plastid | 94.12 | 93.84 |
| CDX70131 | Canola | cytosol | 16.76 | 89.06 |
| CDY14956 | Canola | cytosol | 25.88 | 79.28 |
| AT5G05760.1 | Thale cress | cytosol | 74.41 | 75.3 |
| KRH73168 | Soybean | cytosol | 65.0 | 65.97 |
| KRH15025 | Soybean | cytosol | 62.65 | 63.96 |
| PGSC0003DMT400047329 | Potato | cytosol, plastid | 59.41 | 60.3 |
| KRH14969 | Soybean | cytosol | 41.18 | 57.85 |
| Solyc07g054140.2.1 | Tomato | cytosol, plastid | 53.82 | 57.55 |
| VIT_13s0067g00280.t01 | Wine grape | plastid | 62.94 | 54.18 |
| CDX94818 | Canola | cytosol | 46.47 | 46.88 |
| CDY47175 | Canola | cytosol | 45.59 | 45.32 |
| CDY67342 | Canola | cytosol | 45.0 | 44.87 |
| CDX77428 | Canola | cytosol | 45.29 | 44.77 |
| CDX93010 | Canola | cytosol | 45.59 | 43.91 |
| CDY66440 | Canola | cytosol | 45.59 | 43.3 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:22.7.1.3 | GO:A0A078FEG4 | UniProt:A0A078FEG4 | EnsemblPlants:CDY11339 | ProteinID:CDY11339 |
| ProteinID:CDY11339.1 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 | EnsemblPlantsGene:GSBRNA2T00049385001 |
| InterPro:IPR000727 | PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF117 |
| SMART:SM00397 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | TMHMM:TMhelix | InterPro:T_SNARE_dom |
| UniParc:UPI0004EE811E | SEG:seg | : | : | : | : |
Description
BnaA03g01750DBnaA03g01750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FEG4]
Coordinates
chrLK032010:-:824786..827037
Molecular Weight (calculated)
37518.6 Da
IEP (calculated)
9.717
GRAVY (calculated)
-0.370
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSAFRDRTA EFRSLSQTLK KIGGAIPSVH QAESDPTSSK RSSPGSSRSE FNKKASQIGL RIHETSQKTA RLAKLAKESS IFNDRTLEIQ ELTVLIRNDI
101: TGLNMALSDL QTLQNMEIAD GSYSHDKVSH YTAVCDDLKT RLMGATKQFQ DVLTARSENM KAHENRKQLF SAKNAAVDNQ SNAKAVPEPP PWSSSSVSSG
201: NLQQQPLLPP SNSGAPSGSQ LRRRSAIENA PSQQMEMSML QQTVPRQESY SQNRAVALHS VESTITELSG IFTHLATMVT QQGELAIRID DNMDESLVNV
301: EGARSALLQH LTRISSNRWL MIKIFAVIIL FLIVFLFFVA
101: TGLNMALSDL QTLQNMEIAD GSYSHDKVSH YTAVCDDLKT RLMGATKQFQ DVLTARSENM KAHENRKQLF SAKNAAVDNQ SNAKAVPEPP PWSSSSVSSG
201: NLQQQPLLPP SNSGAPSGSQ LRRRSAIENA PSQQMEMSML QQTVPRQESY SQNRAVALHS VESTITELSG IFTHLATMVT QQGELAIRID DNMDESLVNV
301: EGARSALLQH LTRISSNRWL MIKIFAVIIL FLIVFLFFVA
001: MGSTFRDRTV ELHSLSQTLK KIGAIPSVHQ DEDDPASSKR SSPGSEFNKK ASRIGLGIKE TSQKITRLAK LAKQSTIFND RTVEIQELTV LIRNDITGLN
101: MALSDLQTLQ NMELADGNYS QDQVGHYTAV CDDLKTRLMG ATKQLQDVLT TRSENMKAHE NRKQLFSTKN AVDSPPQNNA KSVPEPPPWS SSSNPFGNLQ
201: QPLLPPLNTG APPGSQLRRR SAIENAPSQQ MEMSLLQQTV PKQENYSQSR AVALHSVESR ITELSGIFPQ LATMVTQQGE LAIRIDDNMD ESLVNVEGAR
301: SALLQHLTRI SSNRWLMMKI FAVIILFLIV FLFFVA
101: MALSDLQTLQ NMELADGNYS QDQVGHYTAV CDDLKTRLMG ATKQLQDVLT TRSENMKAHE NRKQLFSTKN AVDSPPQNNA KSVPEPPPWS SSSNPFGNLQ
201: QPLLPPLNTG APPGSQLRRR SAIENAPSQQ MEMSLLQQTV PKQENYSQSR AVALHSVESR ITELSGIFPQ LATMVTQQGE LAIRIDDNMD ESLVNVEGAR
301: SALLQHLTRI SSNRWLMMKI FAVIILFLIV FLFFVA
Arabidopsis Description
SYP31Syntaxin-31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFK1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.