CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011119.1-P	Field mustard	endoplasmic reticulum, extracellular	96.77	96.77
CDY06801	Canola	endoplasmic reticulum	90.65	89.78
AT4G29520.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	86.13	87.25
CDY14207	Canola	endoplasmic reticulum	85.81	87.21
CDY03573	Canola	endoplasmic reticulum, mitochondrion	84.19	78.85
Solyc07g032250.2.1	Tomato	nucleus	59.35	61.13
PGSC0003DMT400021734	Potato	endoplasmic reticulum, extracellular, golgi	59.35	60.93
VIT_11s0016g02520.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	59.03	60.8
KRH49042	Soybean	endoplasmic reticulum, golgi	58.06	60.0
KRH74165	Soybean	endoplasmic reticulum	57.42	58.75
GSMUA_Achr2P15670_001	Banana	endoplasmic reticulum, golgi, vacuole	54.52	54.87
Os06t0150400-01	Rice	endoplasmic reticulum, golgi	52.9	53.59
KXG19314	Sorghum	endoplasmic reticulum	51.94	53.14
Zm00001d045336_P001	Maize	plasma membrane	50.97	52.15
TraesCS4A01G402800.1	Wheat	extracellular	50.97	51.97
TraesCS7A01G104800.1	Wheat	endoplasmic reticulum	50.65	51.31
TraesCS7D01G098600.1	Wheat	endoplasmic reticulum	50.0	50.65
GSMUA_Achr6P26550_001	Banana	plastid	47.42	49.0
TraesCS4A01G402700.1	Wheat	nucleus	16.77	47.27
TraesCS7A01G104400.1	Wheat	nucleus	15.81	44.14
TraesCS7D01G098400.1	Wheat	nucleus	13.87	43.0

Protein Annotations

EnsemblPlants:CDY43511	EnsemblPlantsGene:GSBRNA2T00076794001	InterPro:IPR008139	InterPro:SaposinB_dom	PANTHER:PTHR36058	PFscan:PS50015
ProteinID:CDY43511	ProteinID:CDY43511.1	SEG:seg	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI0004EE42B6
UniProt:A0A078I140	MapMan:35.2	:	:	:	:

Description

BnaA01g07330DBnaA01g07330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I140]

Coordinates

chrLK032560:-:54354..56027

Molecular Weight (calculated)

35168.4 Da

IEP (calculated)

8.685

GRAVY (calculated)

-0.790

Length

310 amino acids

Sequence
(BLAST)

001: MVEVNRVLIA VTLALLASSA LLPVSYGAKK PLSSAPRKED VPFIKCQVCE KLASRLHQLV KEKQLQISPK KISEYEIIEI AENVCNLKKE EADWILKIDI
101: VEKGDKLQLV EQEEEGMCNS ECKTIEAACQ KVIGYSDTDV AEYIYKSKPD LPSLINHLCK DLTDACTKNP PPLPKDRVPG EPFVAKPSKD AEMDKIMRSM
201: QGMPGAPGMK VYSREDIEKY KDNPGKFGNE DEDDSDEEED EKFPKNLGKV LKEKESSKKE EWKKTITKEL KKKGEVLKRN AQKVSNRVRR WWKRVRSSSS
301: KKPKSGKSEL

Best Arabidopsis Sequence Match ( AT4G29520.1 )
(BLAST)

001: MVVMNRVLVA LTLALLASSA LLPVSDAAKK PSSTPRKEDV PYIKCQVCEK LSSRLHQLVK EKQQQISPKK ISEYEIIEIA ENVCNLKKEE ADWMLKIDIV
101: EKGDNLVLVE QQEEGMCNSK CKTIENACQK VIGYSDTDVA EYIYKSKPDL VSLVNHLCKD LTDACSKKPP PVPKDRVPGE PFVAKPSKDA EMDKILRSMQ
201: GMPGAPGMKV YSREDIEKGN IGNEDDDGDD DEDEEEDDKF PKNLGKVLKE KESKTEELKK TITKEFKKKG EALKRHAQKV SNRVRRWWKG LGSSSSKKPK
301: SGKSEL

Arabidopsis Description

Nucleophosmin [Source:UniProtKB/TrEMBL;Acc:Q9SU93]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.