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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 2
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 4
  • plasma membrane 4
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:nucleus, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:golgi
Plant-mPloc:nucleus
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:endoplasmic reticulum
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH49042 Soybean endoplasmic reticulum, golgi 90.43 91.33
VIT_11s0016g02520.t01 Wine grape endoplasmic reticulum, golgi, vacuole 71.95 72.43
PGSC0003DMT400021734 Potato endoplasmic reticulum, extracellular, golgi 68.65 68.87
Solyc07g032250.2.1 Tomato nucleus 67.33 67.77
AT4G29520.1 Thale cress endoplasmic reticulum, extracellular, vacuole 59.08 58.5
Bra010324.1-P Field mustard endoplasmic reticulum 58.42 58.03
GSMUA_Achr2P15670_001 Banana endoplasmic reticulum, golgi, vacuole 58.75 57.79
CDY14207 Canola endoplasmic reticulum 58.09 57.7
CDY43511 Canola endoplasmic reticulum, extracellular 58.75 57.42
Bra011119.1-P Field mustard endoplasmic reticulum, extracellular 58.42 57.1
CDY06801 Canola endoplasmic reticulum 58.75 56.87
TraesCS4A01G402700.1 Wheat nucleus 20.46 56.36
TraesCS4A01G402800.1 Wheat extracellular 56.44 56.25
KXG19314 Sorghum endoplasmic reticulum 56.11 56.11
Os06t0150400-01 Rice endoplasmic reticulum, golgi 55.78 55.23
Zm00001d045336_P001 Maize plasma membrane 55.12 55.12
TraesCS7A01G104800.1 Wheat endoplasmic reticulum 55.45 54.9
TraesCS7D01G098600.1 Wheat endoplasmic reticulum 54.79 54.25
CDY03573 Canola endoplasmic reticulum, mitochondrion 58.42 53.47
TraesCS7D01G098400.1 Wheat nucleus 17.16 52.0
GSMUA_Achr6P26550_001 Banana plastid 50.83 51.33
TraesCS7A01G104400.1 Wheat nucleus 16.83 45.95
Protein Annotations
EMBL:ACUP02000007EnsemblPlants:KRH74165EnsemblPlantsGene:GLYMA_01G003700EntrezGene:100778421InterPro:IPR008139InterPro:SaposinB_dom
ncoils:CoilPANTHER:PTHR36058PFscan:PS50015ProteinID:KRH74165ProteinID:KRH74165.1SEG:seg
SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0002337617UniProt:I1J4C8MapMan:35.2:
Description
hypothetical protein
Coordinates
chr1:+:391477..396784
Molecular Weight (calculated)
34337.1 Da
IEP (calculated)
6.751
GRAVY (calculated)
-0.744
Length
303 amino acids
Sequence
(BLAST)
001: MKMKGVLWVV VVSVVVAAWI PLSHCSKKPV GVARKEDIPY IKCQVCEKLA KELYQQVQNK QAEIAPKKIS EYQIIEIAEN VCNLKKVEAD WILRIDIVEK
101: EDRLELVEQD SEGQCNSECK TIERACQEVI GYSDTDVAEY LYNSKPDIDS LRNYLCKDLS KACSSKPPPV PKDRAPGEPF VAKSSKEAEM EKLLKSMEGM
201: PGAPGMKMYS RDDLMNMKNF GGEDGDEEDE DDDDDEASFP SKLGNVLRAK ESGKRDWKQM VKKGIEDASM TLKKHANKVS NHIRQWWRGK RRTNSKKGGK
301: TEL
Best Arabidopsis Sequence Match ( AT4G29520.1 )
(BLAST)
001: MVVMNRVLVA LTLALLASSA LLPVSDAAKK PSSTPRKEDV PYIKCQVCEK LSSRLHQLVK EKQQQISPKK ISEYEIIEIA ENVCNLKKEE ADWMLKIDIV
101: EKGDNLVLVE QQEEGMCNSK CKTIENACQK VIGYSDTDVA EYIYKSKPDL VSLVNHLCKD LTDACSKKPP PVPKDRVPGE PFVAKPSKDA EMDKILRSMQ
201: GMPGAPGMKV YSREDIEKGN IGNEDDDGDD DEDEEEDDKF PKNLGKVLKE KESKTEELKK TITKEFKKKG EALKRHAQKV SNRVRRWWKG LGSSSSKKPK
301: SGKSEL
Arabidopsis Description
Nucleophosmin [Source:UniProtKB/TrEMBL;Acc:Q9SU93]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.