Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G098400.1 | Wheat | nucleus | 85.45 | 94.0 |
| TraesCS7A01G104400.1 | Wheat | nucleus | 83.64 | 82.88 |
| TraesCS4A01G402800.1 | Wheat | extracellular | 100.0 | 36.18 |
| TraesCS7A01G104800.1 | Wheat | endoplasmic reticulum | 99.09 | 35.62 |
| Zm00001d045336_P001 | Maize | plasma membrane | 75.45 | 27.39 |
| KXG19314 | Sorghum | endoplasmic reticulum | 74.55 | 27.06 |
| Os06t0150400-01 | Rice | endoplasmic reticulum, golgi | 73.64 | 26.47 |
| KRH74165 | Soybean | endoplasmic reticulum | 56.36 | 20.46 |
| VIT_11s0016g02520.t01 | Wine grape | endoplasmic reticulum, golgi, vacuole | 52.73 | 19.27 |
| GSMUA_Achr2P15670_001 | Banana | endoplasmic reticulum, golgi, vacuole | 53.64 | 19.16 |
| KRH49042 | Soybean | endoplasmic reticulum, golgi | 51.82 | 19.0 |
| CDY14207 | Canola | endoplasmic reticulum | 51.82 | 18.69 |
| Bra010324.1-P | Field mustard | endoplasmic reticulum | 50.91 | 18.36 |
| AT4G29520.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 50.91 | 18.3 |
| CDY06801 | Canola | endoplasmic reticulum | 50.0 | 17.57 |
| PGSC0003DMT400021734 | Potato | endoplasmic reticulum, extracellular, golgi | 48.18 | 17.55 |
| Solyc07g032250.2.1 | Tomato | nucleus | 47.27 | 17.28 |
| Bra011119.1-P | Field mustard | endoplasmic reticulum, extracellular | 48.18 | 17.1 |
| CDY43511 | Canola | endoplasmic reticulum, extracellular | 47.27 | 16.77 |
| CDY03573 | Canola | endoplasmic reticulum, mitochondrion | 50.0 | 16.62 |
| GSMUA_Achr6P26550_001 | Banana | plastid | 28.18 | 10.33 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G402700.1 | EnsemblPlantsGene:TraesCS4A01G402700 | PANTHER:PTHR36058 | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr4A:-:676455378..676457237
Molecular Weight (calculated)
12452.0 Da
IEP (calculated)
10.061
GRAVY (calculated)
-1.297
Length
110 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKIMRSMEG MPGAPNMKMY SRDDLMKNNF GVEGDEDDED DDEDEDSLPK NLGNILKNKG PQKKDLKQQV VKQIKDTGKK LKGHVSKVSK AVKSWWKGKK
101: KPAKSSKSEL
101: KPAKSSKSEL
001: MVVMNRVLVA LTLALLASSA LLPVSDAAKK PSSTPRKEDV PYIKCQVCEK LSSRLHQLVK EKQQQISPKK ISEYEIIEIA ENVCNLKKEE ADWMLKIDIV
101: EKGDNLVLVE QQEEGMCNSK CKTIENACQK VIGYSDTDVA EYIYKSKPDL VSLVNHLCKD LTDACSKKPP PVPKDRVPGE PFVAKPSKDA EMDKILRSMQ
201: GMPGAPGMKV YSREDIEKGN IGNEDDDGDD DEDEEEDDKF PKNLGKVLKE KESKTEELKK TITKEFKKKG EALKRHAQKV SNRVRRWWKG LGSSSSKKPK
301: SGKSEL
101: EKGDNLVLVE QQEEGMCNSK CKTIENACQK VIGYSDTDVA EYIYKSKPDL VSLVNHLCKD LTDACSKKPP PVPKDRVPGE PFVAKPSKDA EMDKILRSMQ
201: GMPGAPGMKV YSREDIEKGN IGNEDDDGDD DEDEEEDDKF PKNLGKVLKE KESKTEELKK TITKEFKKKG EALKRHAQKV SNRVRRWWKG LGSSSSKKPK
301: SGKSEL
Arabidopsis Description
Nucleophosmin [Source:UniProtKB/TrEMBL;Acc:Q9SU93]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.