Factsheet for GSMUA_Achr2P15670_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g02520.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	58.44	59.8
PGSC0003DMT400021734	Potato	endoplasmic reticulum, extracellular, golgi	58.44	59.6
KRH49042	Soybean	endoplasmic reticulum, golgi	57.47	59.0
Solyc07g032250.2.1	Tomato	nucleus	57.47	58.8
KXG19314	Sorghum	endoplasmic reticulum	57.79	58.75
KRH74165	Soybean	endoplasmic reticulum	57.79	58.75
Os06t0150400-01	Rice	endoplasmic reticulum, golgi	58.12	58.5
Zm00001d045336_P001	Maize	plasma membrane	56.82	57.76
GSMUA_Achr6P26550_001	Banana	plastid	55.52	57.0
AT4G29520.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	56.49	56.86
Bra010324.1-P	Field mustard	endoplasmic reticulum	54.87	55.41
CDY14207	Canola	endoplasmic reticulum	54.55	55.08
TraesCS4A01G402800.1	Wheat	extracellular	54.22	54.93
TraesCS7A01G104800.1	Wheat	endoplasmic reticulum	54.55	54.9
TraesCS7D01G098600.1	Wheat	endoplasmic reticulum	54.55	54.9
CDY43511	Canola	endoplasmic reticulum, extracellular	54.87	54.52
Bra011119.1-P	Field mustard	endoplasmic reticulum, extracellular	54.87	54.52
CDY06801	Canola	endoplasmic reticulum	55.19	54.31
TraesCS4A01G402700.1	Wheat	nucleus	19.16	53.64
TraesCS7A01G104400.1	Wheat	nucleus	18.51	51.35
CDY03573	Canola	endoplasmic reticulum, mitochondrion	53.9	50.15
TraesCS7D01G098400.1	Wheat	nucleus	15.26	47.0

Protein Annotations

EnsemblPlants:GSMUA_Achr2P15670_001	EnsemblPlants:GSMUA_Achr2T15670_001	EnsemblPlantsGene:GSMUA_Achr2G15670_001	GO:GO:0000350	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	InterPro:Isy1	PANTHER:PTHR36058	PFAM:PF06246
SEG:seg	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000296BC70	UniProt:M0S8A8	MapMan:35.2

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G15670_001]

Coordinates

chr2:-:16859790..16865241

Molecular Weight (calculated)

34944.8 Da

IEP (calculated)

5.923

GRAVY (calculated)

-0.689

Length

308 amino acids

Sequence
(BLAST)

001: MAALSKGLFV LSFLFVLLSS VPVSLSSQKK PFSAARREDI PYIKCQVCEK VAHQIYRQVM DKEAQVSPKK VSEFQIIEIA ENICNLKKEQ ADWMLQIDIV
101: EKGDRLQLVE QGIEGMCNSE CKTIERACQE VMGYADTDVA EFVFKTRPSA DSLVKFLCHD LSESCSAETP PVPKDRLPGD PFLAKPSKDA EMEKILRSME
201: GMPGAPSMKM YSREDLMKNN FGDEQSDDDD DDDDDEEDDE DNFPTKLGKV IKDKESPKKD LKQRILQGIT KASKQMKANL HKTSQRIQKW FRGKKTSSKS
301: AKRRKSEL

Best Arabidopsis Sequence Match ( AT4G29520.1 )
(BLAST)

001: MVVMNRVLVA LTLALLASSA LLPVSDAAKK PSSTPRKEDV PYIKCQVCEK LSSRLHQLVK EKQQQISPKK ISEYEIIEIA ENVCNLKKEE ADWMLKIDIV
101: EKGDNLVLVE QQEEGMCNSK CKTIENACQK VIGYSDTDVA EYIYKSKPDL VSLVNHLCKD LTDACSKKPP PVPKDRVPGE PFVAKPSKDA EMDKILRSMQ
201: GMPGAPGMKV YSREDIEKGN IGNEDDDGDD DEDEEEDDKF PKNLGKVLKE KESKTEELKK TITKEFKKKG EALKRHAQKV SNRVRRWWKG LGSSSSKKPK
301: SGKSEL

Arabidopsis Description

Nucleophosmin [Source:UniProtKB/TrEMBL;Acc:Q9SU93]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.