Factsheet for Bra011119.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43511	Canola	endoplasmic reticulum, extracellular	96.77	96.77
CDY06801	Canola	endoplasmic reticulum	90.65	89.78
AT4G29520.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	85.81	86.93
Bra010324.1-P	Field mustard	endoplasmic reticulum	85.48	86.89
VIT_11s0016g02520.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	59.68	61.46
Solyc07g032250.2.1	Tomato	nucleus	58.71	60.47
PGSC0003DMT400021734	Potato	endoplasmic reticulum, extracellular, golgi	58.71	60.26
KRH49042	Soybean	endoplasmic reticulum, golgi	57.74	59.67
KRH74165	Soybean	endoplasmic reticulum	57.1	58.42
GSMUA_Achr2P15670_001	Banana	endoplasmic reticulum, golgi, vacuole	54.52	54.87
Os06t0150400-01	Rice	endoplasmic reticulum, golgi	53.23	53.92
KXG19314	Sorghum	endoplasmic reticulum	51.94	53.14
TraesCS4A01G402800.1	Wheat	extracellular	51.29	52.3
Zm00001d045336_P001	Maize	plasma membrane	50.97	52.15
TraesCS7A01G104800.1	Wheat	endoplasmic reticulum	50.32	50.98
TraesCS7D01G098600.1	Wheat	endoplasmic reticulum	50.32	50.98
GSMUA_Achr6P26550_001	Banana	plastid	47.1	48.67
TraesCS4A01G402700.1	Wheat	nucleus	17.1	48.18
TraesCS7A01G104400.1	Wheat	nucleus	15.81	44.14
TraesCS7D01G098400.1	Wheat	nucleus	14.19	44.0

Protein Annotations

EnsemblPlants:Bra011119.1	EnsemblPlants:Bra011119.1-P	EnsemblPlantsGene:Bra011119	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005886	GO:GO:0016020	InterPro:IPR008139	InterPro:SaposinB_dom
PANTHER:PTHR36058	PFscan:PS50015	SEG:seg	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI000254552D
UniProt:M4D3R5	MapMan:35.2	:	:	:	:

Description

AT4G29520 (E=6e-111) | LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Saposin B (InterPro:IPR008139); Has 120 Blast hits to 120 proteins in 43 species: Archae - 2; Bacteria - 0; Metazoa - 42; Fungi - 10; Plants - 19; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).

Coordinates

chrA01:+:3812206..3813734

Molecular Weight (calculated)

35239.4 Da

IEP (calculated)

8.361

GRAVY (calculated)

-0.802

Length

310 amino acids

Sequence
(BLAST)

001: MVEVNRVLIA VTLALLASSA LLPVSYGAKK PLSSAPRKED VPYIKCQVCE KLASRLHQLV KEKQLQISPK KISEYEIIEI AENVCNLKKE EADWILKIDI
101: VENGDKLQLV EQEEEGMCNS ECKTIEAACQ KVIGYSDTDV AEYIYKSKPD LASLVNHLCK DLTDACTKNP PPLPKDRIPG EPFVAKPSKD AEMDKIMRSM
201: QGMPGAPGMK VYSREDIEKY KDNPGKFGNE DEDDSDEEED DKFPKNLGKV LKEKESSKKE EWRKTITKEL KKKGDVLKRH AQKVSNRVRR WWKRVRSSSS
301: KKPKSEKSEL

Best Arabidopsis Sequence Match ( AT4G29520.1 )
(BLAST)

001: MVVMNRVLVA LTLALLASSA LLPVSDAAKK PSSTPRKEDV PYIKCQVCEK LSSRLHQLVK EKQQQISPKK ISEYEIIEIA ENVCNLKKEE ADWMLKIDIV
101: EKGDNLVLVE QQEEGMCNSK CKTIENACQK VIGYSDTDVA EYIYKSKPDL VSLVNHLCKD LTDACSKKPP PVPKDRVPGE PFVAKPSKDA EMDKILRSMQ
201: GMPGAPGMKV YSREDIEKGN IGNEDDDGDD DEDEEEDDKF PKNLGKVLKE KESKTEELKK TITKEFKKKG EALKRHAQKV SNRVRRWWKG LGSSSSKKPK
301: SGKSEL

Arabidopsis Description

Nucleophosmin [Source:UniProtKB/TrEMBL;Acc:Q9SU93]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.