Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 7
- vacuole 6
- plasma membrane 5
- golgi 5
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY03573 | Canola | endoplasmic reticulum, mitochondrion | 98.69 | 90.94 |
| Bra011119.1-P | Field mustard | endoplasmic reticulum, extracellular | 86.89 | 85.48 |
| Solyc07g032250.2.1 | Tomato | nucleus | 60.98 | 61.79 |
| PGSC0003DMT400021734 | Potato | endoplasmic reticulum, extracellular, golgi | 60.98 | 61.59 |
| KRH49042 | Soybean | endoplasmic reticulum, golgi | 60.0 | 61.0 |
| VIT_11s0016g02520.t01 | Wine grape | endoplasmic reticulum, golgi, vacuole | 59.34 | 60.13 |
| KRH74165 | Soybean | endoplasmic reticulum | 58.03 | 58.42 |
| KXG19314 | Sorghum | endoplasmic reticulum | 57.05 | 57.43 |
| Os06t0150400-01 | Rice | endoplasmic reticulum, golgi | 57.05 | 56.86 |
| Zm00001d045336_P001 | Maize | plasma membrane | 56.07 | 56.44 |
| GSMUA_Achr2P15670_001 | Banana | endoplasmic reticulum, golgi, vacuole | 55.41 | 54.87 |
| TraesCS4A01G402800.1 | Wheat | extracellular | 54.1 | 54.28 |
| TraesCS7A01G104800.1 | Wheat | endoplasmic reticulum | 53.77 | 53.59 |
| TraesCS7D01G098600.1 | Wheat | endoplasmic reticulum | 53.11 | 52.94 |
| TraesCS4A01G402700.1 | Wheat | nucleus | 18.36 | 50.91 |
| GSMUA_Achr6P26550_001 | Banana | plastid | 48.2 | 49.0 |
| TraesCS7A01G104400.1 | Wheat | nucleus | 17.38 | 47.75 |
| TraesCS7D01G098400.1 | Wheat | nucleus | 15.41 | 47.0 |
Protein Annotations
| EnsemblPlants:Bra010324.1 | EnsemblPlants:Bra010324.1-P | EnsemblPlantsGene:Bra010324 | InterPro:IPR008139 | InterPro:SaposinB_dom | PANTHER:PTHR36058 |
| PFscan:PS50015 | SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI00025472A7 | UniProt:M4D1H4 |
| MapMan:35.2 | : | : | : | : | : |
Description
AT4G29520 (E=8e-108) | LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Saposin B (InterPro:IPR008139); Has 120 Blast hits to 120 proteins in 43 species: Archae - 2; Bacteria - 0; Metazoa - 42; Fungi - 10; Plants - 19; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).
Coordinates
chrA08:+:13879123..13880564
Molecular Weight (calculated)
34321.3 Da
IEP (calculated)
7.248
GRAVY (calculated)
-0.720
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MNRVLLIAVV ALALLASSAL LPVGAKKPLS SAPRKEDVPY IKCQVCEKLA SRLHQLVKEK QVEISPKKIS EYEIIEIAEN VCNLKKEEAD WMLKIDIVEK
101: GDKLQLVEQE EEGMCNSECK TIEAACQKVI GYSDTDVAEY IYKSKPDLAS LVNHLCKDLT DACTKNPPPV PKDRVPGEPF VAKPSKDAEM DKIMRSMQGI
201: PGAPGMKVYS REDLEKYKAN PEKFGTEDED GDDDDEDEEE DDKFPKNLGK VLKETKKEEW KKTVTKLLKK KSEALRGHAQ KVSNRVRRWW KGVSSKKSKS
301: GKSEL
101: GDKLQLVEQE EEGMCNSECK TIEAACQKVI GYSDTDVAEY IYKSKPDLAS LVNHLCKDLT DACTKNPPPV PKDRVPGEPF VAKPSKDAEM DKIMRSMQGI
201: PGAPGMKVYS REDLEKYKAN PEKFGTEDED GDDDDEDEEE DDKFPKNLGK VLKETKKEEW KKTVTKLLKK KSEALRGHAQ KVSNRVRRWW KGVSSKKSKS
301: GKSEL
001: MVVMNRVLVA LTLALLASSA LLPVSDAAKK PSSTPRKEDV PYIKCQVCEK LSSRLHQLVK EKQQQISPKK ISEYEIIEIA ENVCNLKKEE ADWMLKIDIV
101: EKGDNLVLVE QQEEGMCNSK CKTIENACQK VIGYSDTDVA EYIYKSKPDL VSLVNHLCKD LTDACSKKPP PVPKDRVPGE PFVAKPSKDA EMDKILRSMQ
201: GMPGAPGMKV YSREDIEKGN IGNEDDDGDD DEDEEEDDKF PKNLGKVLKE KESKTEELKK TITKEFKKKG EALKRHAQKV SNRVRRWWKG LGSSSSKKPK
301: SGKSEL
101: EKGDNLVLVE QQEEGMCNSK CKTIENACQK VIGYSDTDVA EYIYKSKPDL VSLVNHLCKD LTDACSKKPP PVPKDRVPGE PFVAKPSKDA EMDKILRSMQ
201: GMPGAPGMKV YSREDIEKGN IGNEDDDGDD DEDEEEDDKF PKNLGKVLKE KESKTEELKK TITKEFKKKG EALKRHAQKV SNRVRRWWKG LGSSSSKKPK
301: SGKSEL
Arabidopsis Description
Nucleophosmin [Source:UniProtKB/TrEMBL;Acc:Q9SU93]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.