CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum

Predictor Summary:

nucleus 1
mitochondrion 3
endoplasmic reticulum 3
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010324.1-P	Field mustard	endoplasmic reticulum	90.94	98.69
CDY14207	Canola	endoplasmic reticulum	90.63	98.36
CDY43511	Canola	endoplasmic reticulum, extracellular	78.85	84.19
CDY06801	Canola	endoplasmic reticulum	77.64	82.11
Solyc07g032250.2.1	Tomato	nucleus	55.59	61.13
PGSC0003DMT400021734	Potato	endoplasmic reticulum, extracellular, golgi	55.59	60.93
KRH49042	Soybean	endoplasmic reticulum, golgi	54.98	60.67
VIT_11s0016g02520.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	53.78	59.14
KRH74165	Soybean	endoplasmic reticulum	53.47	58.42
KXG19314	Sorghum	endoplasmic reticulum	51.96	56.77
Os06t0150400-01	Rice	endoplasmic reticulum, golgi	51.96	56.21
Zm00001d045336_P001	Maize	plasma membrane	51.06	55.78
GSMUA_Achr2P15670_001	Banana	endoplasmic reticulum, golgi, vacuole	50.15	53.9
TraesCS4A01G402800.1	Wheat	extracellular	49.24	53.62
TraesCS7A01G104800.1	Wheat	endoplasmic reticulum	48.94	52.94
TraesCS7D01G098600.1	Wheat	endoplasmic reticulum	48.34	52.29
TraesCS4A01G402700.1	Wheat	nucleus	16.62	50.0
GSMUA_Achr6P26550_001	Banana	plastid	43.5	48.0
TraesCS7D01G098400.1	Wheat	nucleus	14.2	47.0
TraesCS7A01G104400.1	Wheat	nucleus	15.71	46.85

Protein Annotations

EnsemblPlants:CDY03573	EnsemblPlantsGene:GSBRNA2T00116309001	GO:A0A078EVI4	InterPro:IPR008139	InterPro:SaposinB_dom	PANTHER:PTHR36058
PFscan:PS50015	ProteinID:CDY03573	ProteinID:CDY03573.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EB79FB
MapMan:35.2	:	:	:	:	:

Description

BnaC03g68320D

Coordinates

chrLK031944:+:488061..489840

Molecular Weight (calculated)

37440.2 Da

IEP (calculated)

7.918

GRAVY (calculated)

-0.653

Length

331 amino acids

Sequence
(BLAST)

001: MIFIYTRSSQ ALRESLCLFI HSTVEKMNRV LLIAVVALAL VASSALLPVG AKKPLSSAPR KEDVPYIKCQ VCEKLASRLH QLVKEKQVEI SPKKISEYEI
101: IEIAENVCNL KKEEADWMLK IDIVEKGDKL QLVEQEEEGM CNSECKTIEA ACQKVIGYSD TDVAEYIYKS KPDLASLVNH LCKDLTDACT KNPPPVPKDR
201: VRGEPFVAKP SKDAEMDKMM RSMQGIPGAP GMKVYSREDL EKYKANPEKF GTEDEDGDDD DEDEEEDDKF PKNLGKVLKE TKKEEWKKTV TKLLKKKSEA
301: LRGHAQKVSN RVRRWWKGVS SKKSKSGKSE L

Best Arabidopsis Sequence Match ( AT4G29520.1 )
(BLAST)

001: MVVMNRVLVA LTLALLASSA LLPVSDAAKK PSSTPRKEDV PYIKCQVCEK LSSRLHQLVK EKQQQISPKK ISEYEIIEIA ENVCNLKKEE ADWMLKIDIV
101: EKGDNLVLVE QQEEGMCNSK CKTIENACQK VIGYSDTDVA EYIYKSKPDL VSLVNHLCKD LTDACSKKPP PVPKDRVPGE PFVAKPSKDA EMDKILRSMQ
201: GMPGAPGMKV YSREDIEKGN IGNEDDDGDD DEDEEEDDKF PKNLGKVLKE KESKTEELKK TITKEFKKKG EALKRHAQKV SNRVRRWWKG LGSSSSKKPK
301: SGKSEL

Arabidopsis Description

Nucleophosmin [Source:UniProtKB/TrEMBL;Acc:Q9SU93]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.