CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03573	Canola	endoplasmic reticulum, mitochondrion	98.36	90.63
CDY43511	Canola	endoplasmic reticulum, extracellular	87.21	85.81
CDY06801	Canola	endoplasmic reticulum	85.9	83.71
Solyc07g032250.2.1	Tomato	nucleus	60.66	61.46
PGSC0003DMT400021734	Potato	endoplasmic reticulum, extracellular, golgi	60.66	61.26
KRH49042	Soybean	endoplasmic reticulum, golgi	59.67	60.67
VIT_11s0016g02520.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	59.67	60.47
KRH74165	Soybean	endoplasmic reticulum	57.7	58.09
Os06t0150400-01	Rice	endoplasmic reticulum, golgi	57.38	57.19
KXG19314	Sorghum	endoplasmic reticulum	56.72	57.1
Zm00001d045336_P001	Maize	plasma membrane	55.74	56.11
TraesCS4A01G402800.1	Wheat	extracellular	54.43	54.61
GSMUA_Achr2P15670_001	Banana	endoplasmic reticulum, golgi, vacuole	55.08	54.55
TraesCS7A01G104800.1	Wheat	endoplasmic reticulum	54.1	53.92
TraesCS7D01G098600.1	Wheat	endoplasmic reticulum	53.44	53.27
TraesCS4A01G402700.1	Wheat	nucleus	18.69	51.82
GSMUA_Achr6P26550_001	Banana	plastid	48.2	49.0
TraesCS7A01G104400.1	Wheat	nucleus	17.7	48.65
TraesCS7D01G098400.1	Wheat	nucleus	15.74	48.0

Protein Annotations

EnsemblPlants:CDY14207	EnsemblPlantsGene:GSBRNA2T00078771001	InterPro:IPR008139	InterPro:SaposinB_dom	PANTHER:PTHR36058	PFscan:PS50015
ProteinID:CDY14207	ProteinID:CDY14207.1	SEG:seg	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0004EEAA6E
UniProt:A0A078FMR0	MapMan:35.2	:	:	:	:

Description

BnaA08g13380DBnaA08g13380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FMR0]

Coordinates

chrLK032041:+:184670..186452

Molecular Weight (calculated)

34291.3 Da

IEP (calculated)

7.248

GRAVY (calculated)

-0.718

Length

305 amino acids

Sequence
(BLAST)

001: MNRVLLIAVV ALALLASSAL LPVGAKKPLS SAPRKEDVPY IKCQVCEKLA SRLHQLVKEK QVEISPKKIS EYEIIEIAEN VCNLKKEEAD WMLKIDIVEK
101: GDKLQLVEQE EEGMCNSECK TIEAACQKVI GYSDTDVAEY IYKSKPDLAS LVNHLCKDLT DACTKNPPPV PKDRVPGEPF VAKPSKDAEM DKIMRSMQGI
201: PGAPGMKVYS REDLEKYKAN PEKFGTEDED GDDDDEDEEE DDKFPKNLGK VLKETKKEEW KKTVTKLLKK KGEALRGHAQ KVSNRVRRWW KGVSSKKSKS
301: GKSEL

Best Arabidopsis Sequence Match ( AT4G29520.1 )
(BLAST)

001: MVVMNRVLVA LTLALLASSA LLPVSDAAKK PSSTPRKEDV PYIKCQVCEK LSSRLHQLVK EKQQQISPKK ISEYEIIEIA ENVCNLKKEE ADWMLKIDIV
101: EKGDNLVLVE QQEEGMCNSK CKTIENACQK VIGYSDTDVA EYIYKSKPDL VSLVNHLCKD LTDACSKKPP PVPKDRVPGE PFVAKPSKDA EMDKILRSMQ
201: GMPGAPGMKV YSREDIEKGN IGNEDDDGDD DEDEEEDDKF PKNLGKVLKE KESKTEELKK TITKEFKKKG EALKRHAQKV SNRVRRWWKG LGSSSSKKPK
301: SGKSEL

Arabidopsis Description

Nucleophosmin [Source:UniProtKB/TrEMBL;Acc:Q9SU93]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.