Factsheet for GSMUA_Achr6P26550_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
endoplasmic reticulum 2
nucleus 1
extracellular 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P15670_001	Banana	endoplasmic reticulum, golgi, vacuole	57.0	55.52
VIT_11s0016g02520.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	53.33	53.16
PGSC0003DMT400021734	Potato	endoplasmic reticulum, extracellular, golgi	52.33	51.99
Solyc07g032250.2.1	Tomato	nucleus	51.33	51.16
KRH74165	Soybean	endoplasmic reticulum	51.33	50.83
KRH49042	Soybean	endoplasmic reticulum, golgi	50.33	50.33
Zm00001d045336_P001	Maize	plasma membrane	49.0	48.51
Bra010324.1-P	Field mustard	endoplasmic reticulum	49.0	48.2
CDY14207	Canola	endoplasmic reticulum	49.0	48.2
KXG19314	Sorghum	endoplasmic reticulum	48.33	47.85
Os06t0150400-01	Rice	endoplasmic reticulum, golgi	48.67	47.71
CDY43511	Canola	endoplasmic reticulum, extracellular	49.0	47.42
Bra011119.1-P	Field mustard	endoplasmic reticulum, extracellular	48.67	47.1
AT4G29520.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	48.0	47.06
CDY06801	Canola	endoplasmic reticulum	49.0	46.96
TraesCS4A01G402800.1	Wheat	extracellular	45.67	45.07
TraesCS7A01G104800.1	Wheat	endoplasmic reticulum	45.67	44.77
TraesCS7D01G098600.1	Wheat	endoplasmic reticulum	45.33	44.44
CDY03573	Canola	endoplasmic reticulum, mitochondrion	48.0	43.5
TraesCS4A01G402700.1	Wheat	nucleus	10.33	28.18
TraesCS7A01G104400.1	Wheat	nucleus	9.0	24.32
TraesCS7D01G098400.1	Wheat	nucleus	6.67	20.0

Protein Annotations

EnsemblPlants:GSMUA_Achr6P26550_001	EnsemblPlants:GSMUA_Achr6T26550_001	EnsemblPlantsGene:GSMUA_Achr6G26550_001	GO:GO:0000350	GO:GO:0005575	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
InterPro:Isy1	PANTHER:PTHR36058	PFAM:PF06246	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002953D9B
UniProt:M0TAF0	MapMan:35.2	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G26550_001]

Coordinates

chr6:+:27261286..27266310

Molecular Weight (calculated)

33617.1 Da

IEP (calculated)

4.811

GRAVY (calculated)

-0.470

Length

300 amino acids

Sequence
(BLAST)

001: MFTPISKSSS ASSQAGPIRP SSRCIDPKSG FHFGSSPIER LWRDSDEQRE QQKAEMARLS QRILSSLFLL LLLFIYSSLP YFVASSKKPP PAARKGDIPF
101: IRCQVCEKIA HQIIHQVKKK EAQISPKKVS EFQIIEIAEN ICNLKKEEAD WILQIDVVEK GDKLELVEQG IEGQCNSECK TIEHACQEIM GYSDTDVAEY
201: VFSARPSIDQ LVKFLCKDLS KACSVKPPPI PADRVPGEPF IAKSSKDAEM EKILRSMEGM PGAPGMKMYS REDLMSGKFG EADDDDDDDD DEDNFSEKLV

Best Arabidopsis Sequence Match ( AT4G29520.1 )
(BLAST)

001: MVVMNRVLVA LTLALLASSA LLPVSDAAKK PSSTPRKEDV PYIKCQVCEK LSSRLHQLVK EKQQQISPKK ISEYEIIEIA ENVCNLKKEE ADWMLKIDIV
101: EKGDNLVLVE QQEEGMCNSK CKTIENACQK VIGYSDTDVA EYIYKSKPDL VSLVNHLCKD LTDACSKKPP PVPKDRVPGE PFVAKPSKDA EMDKILRSMQ
201: GMPGAPGMKV YSREDIEKGN IGNEDDDGDD DEDEEEDDKF PKNLGKVLKE KESKTEELKK TITKEFKKKG EALKRHAQKV SNRVRRWWKG LGSSSSKKPK
301: SGKSEL

Arabidopsis Description

Nucleophosmin [Source:UniProtKB/TrEMBL;Acc:Q9SU93]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.