Factsheet for Solyc07g032250.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 4
endoplasmic reticulum 6
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021734	Potato	endoplasmic reticulum, extracellular, golgi	94.68	94.37
KRH49042	Soybean	endoplasmic reticulum, golgi	67.77	68.0
VIT_11s0016g02520.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	67.44	67.44
KRH74165	Soybean	endoplasmic reticulum	67.77	67.33
Bra010324.1-P	Field mustard	endoplasmic reticulum	61.79	60.98
CDY14207	Canola	endoplasmic reticulum	61.46	60.66
CDY43511	Canola	endoplasmic reticulum, extracellular	61.13	59.35
Bra011119.1-P	Field mustard	endoplasmic reticulum, extracellular	60.47	58.71
AT4G29520.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	59.14	58.17
CDY06801	Canola	endoplasmic reticulum	59.8	57.51
GSMUA_Achr2P15670_001	Banana	endoplasmic reticulum, golgi, vacuole	58.8	57.47
CDY03573	Canola	endoplasmic reticulum, mitochondrion	61.13	55.59
Os06t0150400-01	Rice	endoplasmic reticulum, golgi	53.16	52.29
KXG19314	Sorghum	endoplasmic reticulum	51.83	51.49
GSMUA_Achr6P26550_001	Banana	plastid	51.16	51.33
Zm00001d045336_P001	Maize	plasma membrane	51.49	51.16
TraesCS4A01G402800.1	Wheat	extracellular	51.49	50.99
TraesCS7A01G104800.1	Wheat	endoplasmic reticulum	51.16	50.33
TraesCS7D01G098600.1	Wheat	endoplasmic reticulum	50.17	49.35
TraesCS4A01G402700.1	Wheat	nucleus	17.28	47.27
TraesCS7A01G104400.1	Wheat	nucleus	15.61	42.34
TraesCS7D01G098400.1	Wheat	nucleus	13.62	41.0

Protein Annotations

EnsemblPlants:Solyc07g032250.2.1	EnsemblPlantsGene:Solyc07g032250.2	PANTHER:PTHR36058	SEG:seg	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI000276B02E	UniProt:K4CDG7	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr7:-:36550300..36554572

Molecular Weight (calculated)

34412.1 Da

IEP (calculated)

6.980

GRAVY (calculated)

-0.777

Length

301 amino acids

Sequence
(BLAST)

001: MDKFDTIALL LSLIVITIWF SIDVECAKKA GGVARKEDIP YIRCQVCEKL AYQLYHHVHN KQAEISPNKI SEYQIIEISE NVCNLKKQEA DWILKIDIVE
101: QGDRLGLVEQ DSEGQCNSEC KTIERACQDV MDYSDTDVAE YLYKSKSDLD SLKSFLCKDL TKVCSKAPPP VPKNRVPGEP FVAKSSKEAE MEKLMRSMQG
201: MPGAPGMQMY SREDLMKKFG DEDADDDDDD DEGSFPSKLG KVIKEKESKK NDWKQRITKG IQDRSETLKN HANRISHRMR KWWGTKKAQW KKSSKTGKGE
301: L

Best Arabidopsis Sequence Match ( AT4G29520.1 )
(BLAST)

001: MVVMNRVLVA LTLALLASSA LLPVSDAAKK PSSTPRKEDV PYIKCQVCEK LSSRLHQLVK EKQQQISPKK ISEYEIIEIA ENVCNLKKEE ADWMLKIDIV
101: EKGDNLVLVE QQEEGMCNSK CKTIENACQK VIGYSDTDVA EYIYKSKPDL VSLVNHLCKD LTDACSKKPP PVPKDRVPGE PFVAKPSKDA EMDKILRSMQ
201: GMPGAPGMKV YSREDIEKGN IGNEDDDGDD DEDEEEDDKF PKNLGKVLKE KESKTEELKK TITKEFKKKG EALKRHAQKV SNRVRRWWKG LGSSSSKKPK
301: SGKSEL

Arabidopsis Description

Nucleophosmin [Source:UniProtKB/TrEMBL;Acc:Q9SU93]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.