Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 6
- vacuole 5
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43511 | Canola | endoplasmic reticulum, extracellular | 87.25 | 86.13 |
| Bra011119.1-P | Field mustard | endoplasmic reticulum, extracellular | 86.93 | 85.81 |
| CDY06801 | Canola | endoplasmic reticulum | 83.66 | 81.79 |
| VIT_11s0016g02520.t01 | Wine grape | endoplasmic reticulum, golgi, vacuole | 60.13 | 61.13 |
| KRH49042 | Soybean | endoplasmic reticulum, golgi | 59.8 | 61.0 |
| PGSC0003DMT400021734 | Potato | endoplasmic reticulum, extracellular, golgi | 58.5 | 59.27 |
| Solyc07g032250.2.1 | Tomato | nucleus | 58.17 | 59.14 |
| KRH74165 | Soybean | endoplasmic reticulum | 58.5 | 59.08 |
| GSMUA_Achr2P15670_001 | Banana | endoplasmic reticulum, golgi, vacuole | 56.86 | 56.49 |
| Os06t0150400-01 | Rice | endoplasmic reticulum, golgi | 54.9 | 54.9 |
| KXG19314 | Sorghum | endoplasmic reticulum | 53.92 | 54.46 |
| Zm00001d045336_P001 | Maize | plasma membrane | 53.27 | 53.8 |
| TraesCS4A01G402800.1 | Wheat | extracellular | 52.94 | 53.29 |
| TraesCS7A01G104800.1 | Wheat | endoplasmic reticulum | 52.29 | 52.29 |
| TraesCS7D01G098600.1 | Wheat | endoplasmic reticulum | 51.96 | 51.96 |
| TraesCS4A01G402700.1 | Wheat | nucleus | 18.3 | 50.91 |
| GSMUA_Achr6P26550_001 | Banana | plastid | 47.06 | 48.0 |
| TraesCS7D01G098400.1 | Wheat | nucleus | 15.69 | 48.0 |
| TraesCS7A01G104400.1 | Wheat | nucleus | 16.67 | 45.95 |
Protein Annotations
| MapMan:35.2 | EntrezGene:829073 | ProteinID:AEE85639.1 | ArrayExpress:AT4G29520 | EnsemblPlantsGene:AT4G29520 | RefSeq:AT4G29520 |
| TAIR:AT4G29520 | RefSeq:AT4G29520-TAIR-G | EnsemblPlants:AT4G29520.1 | TAIR:AT4G29520.1 | Unigene:At.31913 | ProteinID:CAB45312.1 |
| ProteinID:CAB79710.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005886 | GO:GO:0016020 | InterPro:IPR008139 | RefSeq:NP_194681.1 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001170 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005052 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS50015 | PANTHER:PTHR36058 | UniProt:Q9SU93 | InterPro:SaposinB_dom | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI00000A85CE | SEG:seg | : | : | : | : |
Description
Nucleophosmin [Source:UniProtKB/TrEMBL;Acc:Q9SU93]
Coordinates
chr4:-:14493911..14495789
Molecular Weight (calculated)
34365.3 Da
IEP (calculated)
7.965
GRAVY (calculated)
-0.766
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVMNRVLVA LTLALLASSA LLPVSDAAKK PSSTPRKEDV PYIKCQVCEK LSSRLHQLVK EKQQQISPKK ISEYEIIEIA ENVCNLKKEE ADWMLKIDIV
101: EKGDNLVLVE QQEEGMCNSK CKTIENACQK VIGYSDTDVA EYIYKSKPDL VSLVNHLCKD LTDACSKKPP PVPKDRVPGE PFVAKPSKDA EMDKILRSMQ
201: GMPGAPGMKV YSREDIEKGN IGNEDDDGDD DEDEEEDDKF PKNLGKVLKE KESKTEELKK TITKEFKKKG EALKRHAQKV SNRVRRWWKG LGSSSSKKPK
301: SGKSEL
101: EKGDNLVLVE QQEEGMCNSK CKTIENACQK VIGYSDTDVA EYIYKSKPDL VSLVNHLCKD LTDACSKKPP PVPKDRVPGE PFVAKPSKDA EMDKILRSMQ
201: GMPGAPGMKV YSREDIEKGN IGNEDDDGDD DEDEEEDDKF PKNLGKVLKE KESKTEELKK TITKEFKKKG EALKRHAQKV SNRVRRWWKG LGSSSSKKPK
301: SGKSEL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.