Factsheet for TraesCS4A01G402800.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G402700.1	Wheat	nucleus	36.18	100.0
TraesCS7A01G104800.1	Wheat	endoplasmic reticulum	93.09	92.48
TraesCS7D01G098600.1	Wheat	endoplasmic reticulum	92.11	91.5
TraesCS7A01G104400.1	Wheat	nucleus	30.26	82.88
Zm00001d045336_P001	Maize	plasma membrane	77.3	77.56
KXG19314	Sorghum	endoplasmic reticulum	77.3	77.56
Os06t0150400-01	Rice	endoplasmic reticulum, golgi	75.66	75.16
KRH74165	Soybean	endoplasmic reticulum	56.25	56.44
KRH49042	Soybean	endoplasmic reticulum, golgi	54.28	55.0
VIT_11s0016g02520.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	53.95	54.49
CDY14207	Canola	endoplasmic reticulum	54.61	54.43
GSMUA_Achr2P15670_001	Banana	endoplasmic reticulum, golgi, vacuole	54.93	54.22
Bra010324.1-P	Field mustard	endoplasmic reticulum	54.28	54.1
AT4G29520.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	53.29	52.94
PGSC0003DMT400021734	Potato	endoplasmic reticulum, extracellular, golgi	51.64	51.99
Solyc07g032250.2.1	Tomato	nucleus	50.99	51.49
Bra011119.1-P	Field mustard	endoplasmic reticulum, extracellular	52.3	51.29
CDY43511	Canola	endoplasmic reticulum, extracellular	51.97	50.97
CDY06801	Canola	endoplasmic reticulum	52.3	50.8
CDY03573	Canola	endoplasmic reticulum, mitochondrion	53.62	49.24
GSMUA_Achr6P26550_001	Banana	plastid	45.07	45.67

Protein Annotations

EnsemblPlants:TraesCS4A01G402800.1	EnsemblPlantsGene:TraesCS4A01G402800	PANTHER:PTHR36058	SEG:seg	SignalP:SignalP-noTM	TMHMM:TMhelix
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:-:676527806..676530992

Molecular Weight (calculated)

33517.3 Da

IEP (calculated)

6.011

GRAVY (calculated)

-0.598

Length

304 amino acids

Sequence
(BLAST)

001: MARGSAALVV AVALAAVLIL VAPAAEAAGQ KKPATAARRE DVPYIRCQVC ERIAREISAQ VAAKQQALPP SKKVPEIEII DIAENVCNLK KQEADWMLRI
101: DIVEKGDRLE LVDQDEEGHC NSECKTIERA CQEVMGYADT DVAEFVYTNK PSVDQLIQFV CKDITKACAA DPPPVPKDRI PGEPFAAKPS KDAEMEKIMR
201: SMEGMPGAPN MKMYSRDDLM KNNFGVEGDE DDEDDDEDED SLPKNLGNIL KNKGPQKKDL KQQVVKQIKD TGKKLKGHVS KVSKAVKSWW KGKKKPAKSS
301: KSEL

Best Arabidopsis Sequence Match ( AT4G29520.1 )
(BLAST)

001: MVVMNRVLVA LTLALLASSA LLPVSDAAKK PSSTPRKEDV PYIKCQVCEK LSSRLHQLVK EKQQQISPKK ISEYEIIEIA ENVCNLKKEE ADWMLKIDIV
101: EKGDNLVLVE QQEEGMCNSK CKTIENACQK VIGYSDTDVA EYIYKSKPDL VSLVNHLCKD LTDACSKKPP PVPKDRVPGE PFVAKPSKDA EMDKILRSMQ
201: GMPGAPGMKV YSREDIEKGN IGNEDDDGDD DEDEEEDDKF PKNLGKVLKE KESKTEELKK TITKEFKKKG EALKRHAQKV SNRVRRWWKG LGSSSSKKPK
301: SGKSEL

Arabidopsis Description

Nucleophosmin [Source:UniProtKB/TrEMBL;Acc:Q9SU93]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.