CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011119.1-P	Field mustard	endoplasmic reticulum, extracellular	89.78	90.65
CDY43511	Canola	endoplasmic reticulum, extracellular	89.78	90.65
CDY14207	Canola	endoplasmic reticulum	83.71	85.9
AT4G29520.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	81.79	83.66
CDY03573	Canola	endoplasmic reticulum, mitochondrion	82.11	77.64
Solyc07g032250.2.1	Tomato	nucleus	57.51	59.8
PGSC0003DMT400021734	Potato	endoplasmic reticulum, extracellular, golgi	57.51	59.6
VIT_11s0016g02520.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	57.19	59.47
KRH74165	Soybean	endoplasmic reticulum	56.87	58.75
KRH49042	Soybean	endoplasmic reticulum, golgi	56.23	58.67
GSMUA_Achr2P15670_001	Banana	endoplasmic reticulum, golgi, vacuole	54.31	55.19
KXG19314	Sorghum	endoplasmic reticulum	53.04	54.79
Os06t0150400-01	Rice	endoplasmic reticulum, golgi	53.35	54.58
Zm00001d045336_P001	Maize	plasma membrane	52.08	53.8
TraesCS4A01G402800.1	Wheat	extracellular	50.8	52.3
TraesCS7A01G104800.1	Wheat	endoplasmic reticulum	51.12	52.29
TraesCS7D01G098600.1	Wheat	endoplasmic reticulum	50.48	51.63
TraesCS4A01G402700.1	Wheat	nucleus	17.57	50.0
GSMUA_Achr6P26550_001	Banana	plastid	46.96	49.0
TraesCS7D01G098400.1	Wheat	nucleus	14.7	46.0
TraesCS7A01G104400.1	Wheat	nucleus	16.29	45.95

Protein Annotations

EnsemblPlants:CDY06801	EnsemblPlantsGene:GSBRNA2T00123041001	InterPro:IPR008139	InterPro:SaposinB_dom	PANTHER:PTHR36058	PFscan:PS50015
ProteinID:CDY06801	ProteinID:CDY06801.1	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI0004EE39FB	MapMan:35.2

Description

BnaC01g09000D

Coordinates

chrLK031973:+:362101..363838

Molecular Weight (calculated)

35558.8 Da

IEP (calculated)

8.684

GRAVY (calculated)

-0.815

Length

313 amino acids

Sequence
(BLAST)

001: MVEKMSRVLL AVTLALLASS ALLPVSNAAK LSSAPRKEDV PFIKCQVCEK LASRLHQLVK EKQVQISPKK ISEYEIIEIA ENVCNLKKEE ADWILKIDIV
101: EKGDKLQLVE QEEEGMCNSE CKTIEAACQK VIGYSDTDVA EYIYKSKPDL ASLVNHLCKD LTDACTKNPP PLPKDRVPGE PFVAKPSKDA EMDKIMRSMQ
201: GMPGAPGMKV YSREDIEKYK DNPGKFGNED EDDDEDEDEE KEDDKFPKNL GKVLKEKKSS KKEEWKKTIT KELKKKGGVL KRHAQKVSNR VRRWWKRVRS
301: SYSKKPKSSK SEL

Best Arabidopsis Sequence Match ( AT4G29520.1 )
(BLAST)

001: MVVMNRVLVA LTLALLASSA LLPVSDAAKK PSSTPRKEDV PYIKCQVCEK LSSRLHQLVK EKQQQISPKK ISEYEIIEIA ENVCNLKKEE ADWMLKIDIV
101: EKGDNLVLVE QQEEGMCNSK CKTIENACQK VIGYSDTDVA EYIYKSKPDL VSLVNHLCKD LTDACSKKPP PVPKDRVPGE PFVAKPSKDA EMDKILRSMQ
201: GMPGAPGMKV YSREDIEKGN IGNEDDDGDD DEDEEEDDKF PKNLGKVLKE KESKTEELKK TITKEFKKKG EALKRHAQKV SNRVRRWWKG LGSSSSKKPK
301: SGKSEL

Arabidopsis Description

Nucleophosmin [Source:UniProtKB/TrEMBL;Acc:Q9SU93]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.