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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 7
  • vacuole 5
  • plasma membrane 6
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:endoplasmic reticulum
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY28257 Canola endoplasmic reticulum 96.83 97.72
AT4G31340.1 Thale cress endoplasmic reticulum 84.39 85.35
CDX72304 Canola endoplasmic reticulum, plasma membrane, vacuole 81.22 82.53
CDY20313 Canola endoplasmic reticulum, plasma membrane, vacuole 66.06 67.91
CDY46149 Canola endoplasmic reticulum, extracellular, plasma membrane 65.84 67.67
CDY34774 Canola endoplasmic reticulum, extracellular, plasma membrane 63.8 66.98
CDY67576 Canola extracellular 12.9 56.44
CDY13424 Canola plasma membrane 78.73 53.95
KRH52641 Soybean endoplasmic reticulum 54.07 53.59
KRH61982 Soybean endoplasmic reticulum 52.71 53.32
PGSC0003DMT400076024 Potato cytosol, nucleus 31.22 51.88
VIT_04s0008g02720.t01 Wine grape endoplasmic reticulum, extracellular, plasma membrane 51.13 50.33
Solyc08g074290.2.1 Tomato nucleus 50.23 49.89
GSMUA_Achr10P... Banana endoplasmic reticulum 47.96 47.64
Solyc08g006030.2.1 Tomato unclear 47.74 47.63
HORVU7Hr1G052350.1 Barley cytosol, plasma membrane 43.89 47.09
Os09t0497700-01 Rice plasma membrane 47.29 46.86
Zm00001d029841_P001 Maize cytosol 23.53 46.22
PGSC0003DMT400038486 Potato endoplasmic reticulum 47.74 45.47
Os08t0519400-01 Rice plasma membrane 45.7 44.69
KXG25592 Sorghum endoplasmic reticulum, golgi, plasma membrane 45.7 44.4
GSMUA_Achr6P01760_001 Banana endoplasmic reticulum 44.12 43.92
Solyc05g010750.2.1 Tomato cytosol 12.44 43.65
TraesCS7B01G149500.2 Wheat endoplasmic reticulum 44.57 43.58
TraesCS7A01G253000.2 Wheat golgi 44.34 43.36
GSMUA_Achr9P13940_001 Banana endoplasmic reticulum 42.76 42.66
TraesCS5B01G275100.2 Wheat endoplasmic reticulum, extracellular, plasma membrane 43.44 42.01
Zm00001d049764_P001 Maize plasma membrane 43.21 41.89
TraesCS5D01G283100.2 Wheat endoplasmic reticulum, extracellular, plasma membrane 43.21 41.61
TraesCS5A01G275800.2 Wheat endoplasmic reticulum 42.76 41.36
OQU89720 Sorghum endoplasmic reticulum, extracellular, plasma membrane 42.76 41.18
Zm00001d031532_P001 Maize plasma membrane 42.08 41.06
Solyc05g010760.1.1 Tomato endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 9.5 40.38
Zm00001d005407_P001 Maize extracellular 26.02 40.35
Zm00001d024398_P001 Maize cytosol 11.99 40.15
Zm00001d006052_P004 Maize endoplasmic reticulum 41.86 37.53
HORVU5Hr1G074800.2 Barley plastid 42.08 34.96
HORVU2Hr1G002290.5 Barley endoplasmic reticulum, extracellular 8.82 32.77
Os04t0607150-00 Rice vacuole 25.34 30.68
CDY12172 Canola cytosol 6.56 29.0
TraesCS2D01G428600.1 Wheat golgi, vacuole 27.38 28.88
TraesCS2A01G430700.2 Wheat golgi, vacuole 27.83 28.87
TraesCS2B01G451900.1 Wheat golgi, vacuole 27.15 28.5
CDX68621 Canola plasma membrane 24.89 28.42
CDY43554 Canola plasma membrane 24.89 28.35
KXG27068 Sorghum plasma membrane 24.89 28.13
HORVU2Hr1G100500.17 Barley endoplasmic reticulum, golgi, mitochondrion, nucleus 25.79 24.73
CDX92946 Canola cytosol 9.5 15.22
CDY24314 Canola mitochondrion 6.33 14.58
Protein Annotations
EnsemblPlants:CDX68735EnsemblPlantsGene:GSBRNA2T00130431001Gene3D:1.20.5.1230GO:A0A078BVC6GO:GO:0005575GO:GO:0016020
GO:GO:0016021ncoils:CoilPANTHER:PTHR34360PANTHER:PTHR34360:SF1ProteinID:CDX68735ProteinID:CDX68735.1
SEG:segSignalP:SignalP-noTMSUPFAM:SSF57997SUPFAM:SSF58113TMHMM:TMhelixUniParc:UPI0004EEFE83
MapMan:35.2:::::
Description
BnaC01g07180D
Coordinates
chrLK031789:+:1032864..1037333
Molecular Weight (calculated)
49638.5 Da
IEP (calculated)
9.556
GRAVY (calculated)
-0.447
Length
442 amino acids
Sequence
(BLAST)
001: MAAAKLVALL LLLALVFTTT VFADAGEEPE VVDAAGSDGS SKIQLDQLNA KIRALETQID EKTREVKGKD ELVAEKEKLL KQKEDKIASL QTEVSSLQGS
101: SDSAKELGKA QERVVELEKQ IEVLRNFLEQ KNKEKASTEA RTKEAEKKLS EVNSSLEKLQ KTNEEQKNKI GKLERAIKMA EEEMLRTKLE ATSKAKALLE
201: AHGSWLPPWL AVHWSTFQTY TETHWEAHGK PVVETVILKV TEAKAQADKW AVPHVENIKT KYIPAVKETV ATHVQPHVRT LSIKAQEAYH ASKSAVSPHI
301: VTVQELVDPY YQEAKKFSKP YVEQVATATK PHVDKIKVAV KPYTTKVVIV YTEFLESATT YHNQVQAHVE QKLKSHALHE LTEAFATSEF VWFAASALLA
401: LPIFFAYRVL VSLFCTKTKT PVKHPHHHGR RKTKKGHSHV EK
Best Arabidopsis Sequence Match ( AT4G31340.1 )
(BLAST)
001: MAAAKLVALL LLALLFTTSV FADADEPEVS EAAGSDGSSK IHLDQLNAKI RALESQIDEK TREVQGKDEV VAEKEKLLKE REDKIASLQT EVSSLQKKGS
101: SDSAKQLGKA QARADELEKQ VEVLKNFLEQ KNKEKDSTEA RTNEAEKKLR ELNSSLDKLQ KTNEEQKNKI GKLERAIKIA EEEMLRTKLE ATTKAKELLE
201: AHGSWLPPWL AVHWFKFQTY TETHWEAHGK PAVETVILKV TEAKAQAEKW AEPHVENVKT KYIPAIKETV TIHVEPHFRT LSIKAKEAYH SSKSAVSPHI
301: VTVQEFVDPY YQEAKKFSKP YVDQVATTTK PHVDKMKVAM KPYTTKVIIV YTEFLESATT YHNQVQAHVE RKLKSHELTE PFATNEFVWF AASALLVFPI
401: FVAYRVLSSL FCTKTKKPVK HPHHHGRRKA KRAHTDK
Arabidopsis Description
AT4G31340 protein [Source:UniProtKB/TrEMBL;Acc:Q8GUN1]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.