Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
29385242
|
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G149500.2 | Wheat | endoplasmic reticulum | 93.93 | 85.62 |
| TraesCS7A01G253000.2 | Wheat | golgi | 93.93 | 85.62 |
| Zm00001d029841_P001 | Maize | cytosol | 40.78 | 74.67 |
| Os08t0519400-01 | Rice | plasma membrane | 76.46 | 69.69 |
| KXG25592 | Sorghum | endoplasmic reticulum, golgi, plasma membrane | 73.79 | 66.81 |
| Zm00001d049764_P001 | Maize | plasma membrane | 73.3 | 66.23 |
| HORVU2Hr1G002290.5 | Barley | endoplasmic reticulum, extracellular | 18.93 | 65.55 |
| Zm00001d005407_P001 | Maize | extracellular | 45.15 | 65.26 |
| Zm00001d031532_P001 | Maize | plasma membrane | 69.9 | 63.58 |
| PGSC0003DMT400076024 | Potato | cytosol, nucleus | 34.22 | 53.01 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 56.8 | 52.58 |
| GSMUA_Achr6P01760_001 | Banana | endoplasmic reticulum | 54.85 | 50.9 |
| VIT_04s0008g02720.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 55.1 | 50.56 |
| KRH52641 | Soybean | endoplasmic reticulum | 54.61 | 50.45 |
| GSMUA_Achr9P13940_001 | Banana | endoplasmic reticulum | 54.13 | 50.34 |
| KRH61982 | Soybean | endoplasmic reticulum | 52.91 | 49.89 |
| HORVU5Hr1G074800.2 | Barley | plastid | 61.16 | 47.37 |
| Solyc08g074290.2.1 | Tomato | nucleus | 49.27 | 45.62 |
| CDY28257 | Canola | endoplasmic reticulum | 47.57 | 44.75 |
| CDY20313 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 46.6 | 44.65 |
| Solyc08g006030.2.1 | Tomato | unclear | 47.82 | 44.47 |
| CDY46149 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 46.36 | 44.42 |
| Bra011260.1-P | Field mustard | endoplasmic reticulum | 47.09 | 44.29 |
| AT4G31340.1 | Thale cress | endoplasmic reticulum | 46.84 | 44.16 |
| AT2G24420.1 | Thale cress | endoplasmic reticulum, vacuole | 47.09 | 44.09 |
| CDX72304 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 46.36 | 43.91 |
| CDX68735 | Canola | endoplasmic reticulum | 47.09 | 43.89 |
| PGSC0003DMT400038486 | Potato | endoplasmic reticulum | 48.54 | 43.1 |
| Bra032096.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 46.36 | 42.44 |
| CDY34774 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 42.48 | 41.57 |
| Solyc05g010750.2.1 | Tomato | cytosol | 12.38 | 40.48 |
| Solyc07g008970.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 42.72 | 40.37 |
| PGSC0003DMT400073989 | Potato | extracellular, plasma membrane, vacuole | 41.99 | 39.05 |
| Bra007856.1-P | Field mustard | endoplasmic reticulum, vacuole | 41.02 | 36.98 |
| Solyc05g010760.1.1 | Tomato | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 8.98 | 35.58 |
| CDY12172 | Canola | cytosol | 8.25 | 34.0 |
| Bra011163.1-P | Field mustard | plasma membrane | 28.16 | 31.61 |
| CDY43554 | Canola | plasma membrane | 29.13 | 30.93 |
| CDX68621 | Canola | plasma membrane | 28.88 | 30.75 |
| AT4G30090.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 28.88 | 30.67 |
| Bra024012.1-P | Field mustard | mitochondrion | 46.6 | 30.57 |
| CDY13424 | Canola | plasma membrane | 46.6 | 29.77 |
| HORVU2Hr1G100500.17 | Barley | endoplasmic reticulum, golgi, mitochondrion, nucleus | 29.85 | 26.68 |
| CDY67576 | Canola | extracellular | 5.1 | 20.79 |
| Bra001871.1-P | Field mustard | cytosol | 12.62 | 18.91 |
| CDX92946 | Canola | cytosol | 12.62 | 18.84 |
| CDY24314 | Canola | mitochondrion | 4.61 | 9.9 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G052350.1 | EnsemblPlantsGene:HORVU7Hr1G052350 | Gene3D:1.20.120.20 | Gene3D:1.20.5.340 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | ncoils:Coil | PANTHER:PTHR34360 | PANTHER:PTHR34360:SF4 | SEG:seg | SUPFAM:SSF58100 |
| SUPFAM:SSF58113 | TMHMM:TMhelix | UniParc:UPI000B472B75 | UniProt:A0A287WHM1 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr7H:+:198939468..198944980
Molecular Weight (calculated)
46555.7 Da
IEP (calculated)
10.070
GRAVY (calculated)
-0.650
Length
412 amino acids
Sequence
(BLAST)
(BLAST)
001: VKEAAEAAAL RAELAQLREK ISALESDIAD RSQDLKSKDD GIAKLEKDIG DKSQKIATLQ SEITSLQKTG SVAAEEQAGK AIARAVELEK QIEKLNKEIE
101: AQSSQRTTLE ARANKAEKKV QDLNSKLESL QKASGEQKRM IQKTERALKV AEEELMRLQL EASTKAKQLT EVHGAWLPPW LVTHSAQYLE VVSGHWNEHG
201: KPAMDSFLQK ASEKSAHAKK WAEPHIETAK LKLVPVKEKL AVLKKNAEPY VEKASVKSVE VYEASRDAIT PHFIKFKEIS DPYFQEAKKI SKPYIDQVAE
301: VTKPHVEKVR GTLKPYTKRA VHVYGTFLES ATTYHRQAQA TISDYLHQHE ITKAVVTKEL VWFLASALLA LPVFIMYRLL VETFCTKKQK RSSRDSNTNH
401: GNRRHKRRHA EK
101: AQSSQRTTLE ARANKAEKKV QDLNSKLESL QKASGEQKRM IQKTERALKV AEEELMRLQL EASTKAKQLT EVHGAWLPPW LVTHSAQYLE VVSGHWNEHG
201: KPAMDSFLQK ASEKSAHAKK WAEPHIETAK LKLVPVKEKL AVLKKNAEPY VEKASVKSVE VYEASRDAIT PHFIKFKEIS DPYFQEAKKI SKPYIDQVAE
301: VTKPHVEKVR GTLKPYTKRA VHVYGTFLES ATTYHRQAQA TISDYLHQHE ITKAVVTKEL VWFLASALLA LPVFIMYRLL VETFCTKKQK RSSRDSNTNH
401: GNRRHKRRHA EK
001: MAAAKLVALL LLALLFTTSV FADADEPEVS EAAGSDGSSK IHLDQLNAKI RALESQIDEK TREVQGKDEV VAEKEKLLKE REDKIASLQT EVSSLQKKGS
101: SDSAKQLGKA QARADELEKQ VEVLKNFLEQ KNKEKDSTEA RTNEAEKKLR ELNSSLDKLQ KTNEEQKNKI GKLERAIKIA EEEMLRTKLE ATTKAKELLE
201: AHGSWLPPWL AVHWFKFQTY TETHWEAHGK PAVETVILKV TEAKAQAEKW AEPHVENVKT KYIPAIKETV TIHVEPHFRT LSIKAKEAYH SSKSAVSPHI
301: VTVQEFVDPY YQEAKKFSKP YVDQVATTTK PHVDKMKVAM KPYTTKVIIV YTEFLESATT YHNQVQAHVE RKLKSHELTE PFATNEFVWF AASALLVFPI
401: FVAYRVLSSL FCTKTKKPVK HPHHHGRRKA KRAHTDK
101: SDSAKQLGKA QARADELEKQ VEVLKNFLEQ KNKEKDSTEA RTNEAEKKLR ELNSSLDKLQ KTNEEQKNKI GKLERAIKIA EEEMLRTKLE ATTKAKELLE
201: AHGSWLPPWL AVHWFKFQTY TETHWEAHGK PAVETVILKV TEAKAQAEKW AEPHVENVKT KYIPAIKETV TIHVEPHFRT LSIKAKEAYH SSKSAVSPHI
301: VTVQEFVDPY YQEAKKFSKP YVDQVATTTK PHVDKMKVAM KPYTTKVIIV YTEFLESATT YHNQVQAHVE RKLKSHELTE PFATNEFVWF AASALLVFPI
401: FVAYRVLSSL FCTKTKKPVK HPHHHGRRKA KRAHTDK
Arabidopsis Description
AT4G31340 protein [Source:UniProtKB/TrEMBL;Acc:Q8GUN1]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.