Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25464976
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400076024 | Potato | cytosol, nucleus | 53.93 | 90.23 |
| Solyc05g010750.2.1 | Tomato | cytosol | 23.15 | 81.75 |
| Solyc05g010760.1.1 | Tomato | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 17.53 | 75.0 |
| Solyc08g006030.2.1 | Tomato | unclear | 61.35 | 61.63 |
| KRH52641 | Soybean | endoplasmic reticulum | 53.93 | 53.81 |
| VIT_04s0008g02720.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 54.16 | 53.67 |
| KRH61982 | Soybean | endoplasmic reticulum | 51.69 | 52.63 |
| AT4G31340.1 | Thale cress | endoplasmic reticulum | 51.01 | 51.95 |
| AT2G24420.1 | Thale cress | endoplasmic reticulum, vacuole | 51.24 | 51.82 |
| Bra011260.1-P | Field mustard | endoplasmic reticulum | 50.34 | 51.14 |
| CDY28257 | Canola | endoplasmic reticulum | 49.66 | 50.46 |
| CDX68735 | Canola | endoplasmic reticulum | 49.89 | 50.23 |
| Zm00001d029841_P001 | Maize | cytosol | 25.39 | 50.22 |
| CDY46149 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 48.31 | 50.0 |
| CDY34774 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 46.74 | 49.41 |
| HORVU7Hr1G052350.1 | Barley | cytosol, plasma membrane | 45.62 | 49.27 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 49.21 | 49.21 |
| CDX72304 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 47.87 | 48.97 |
| Os08t0519400-01 | Rice | plasma membrane | 49.66 | 48.89 |
| CDY20313 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 47.19 | 48.84 |
| Os09t0497700-01 | Rice | plasma membrane | 48.76 | 48.65 |
| Bra032096.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 48.09 | 47.56 |
| GSMUA_Achr6P01760_001 | Banana | endoplasmic reticulum | 47.42 | 47.52 |
| TraesCS7B01G149500.2 | Wheat | endoplasmic reticulum | 48.09 | 47.35 |
| GSMUA_Achr9P13940_001 | Banana | endoplasmic reticulum | 46.97 | 47.18 |
| TraesCS7A01G253000.2 | Wheat | golgi | 47.42 | 46.68 |
| KXG25592 | Sorghum | endoplasmic reticulum, golgi, plasma membrane | 46.52 | 45.49 |
| Zm00001d024398_P001 | Maize | cytosol | 13.48 | 45.45 |
| Bra007856.1-P | Field mustard | endoplasmic reticulum, vacuole | 46.52 | 45.3 |
| Zm00001d031532_P001 | Maize | plasma membrane | 45.39 | 44.59 |
| Zm00001d049764_P001 | Maize | plasma membrane | 45.17 | 44.08 |
| OQU89720 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 45.39 | 44.01 |
| Zm00001d005407_P001 | Maize | extracellular | 27.42 | 42.81 |
| TraesCS5B01G275100.2 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 43.82 | 42.67 |
| TraesCS5D01G283100.2 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 43.37 | 42.05 |
| TraesCS5A01G275800.2 | Wheat | endoplasmic reticulum | 42.92 | 41.79 |
| Solyc07g008970.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 38.65 | 39.45 |
| Zm00001d006052_P004 | Maize | endoplasmic reticulum | 42.25 | 38.13 |
| HORVU2Hr1G002290.5 | Barley | endoplasmic reticulum, extracellular | 9.66 | 36.13 |
| HORVU5Hr1G074800.2 | Barley | plastid | 42.47 | 35.53 |
| Bra024012.1-P | Field mustard | mitochondrion | 47.87 | 33.92 |
| CDY13424 | Canola | plasma membrane | 47.87 | 33.02 |
| CDY67576 | Canola | extracellular | 7.19 | 31.68 |
| Os04t0607150-00 | Rice | vacuole | 25.17 | 30.68 |
| TraesCS2D01G428600.1 | Wheat | golgi, vacuole | 25.62 | 27.21 |
| TraesCS2A01G430700.2 | Wheat | golgi, vacuole | 25.84 | 27.0 |
| TraesCS2B01G451900.1 | Wheat | golgi, vacuole | 25.17 | 26.6 |
| KXG27068 | Sorghum | plasma membrane | 22.92 | 26.09 |
| HORVU2Hr1G100500.17 | Barley | endoplasmic reticulum, golgi, mitochondrion, nucleus | 24.27 | 23.43 |
Protein Annotations
| EnsemblPlants:Solyc08g074290.2.1 | EnsemblPlantsGene:Solyc08g074290.2 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | ncoils:Coil |
| PANTHER:PTHR34360 | PANTHER:PTHR34360:SF1 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF58113 | TMHMM:TMhelix |
| UniParc:UPI000276AEE6 | UniProt:K4CME9 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr8:+:58401712..58411475
Molecular Weight (calculated)
51148.1 Da
IEP (calculated)
10.154
GRAVY (calculated)
-0.616
Length
445 amino acids
Sequence
(BLAST)
(BLAST)
001: MASCWKFLFI SFVFLAVVAP KVKADSGSVL DDEVEVVRSD VPTSQELEHL KSKIQSLESN IEETARALKG KDEAIADKEN IIKEKSERIK SLSSELASLQ
101: KKGTLDSEEQ VGKARAQADQ LEKQVERLKE EAEMKNKEKR DFKAHIGETE KRVSELNLKV EKLEKTVEKQ KEKLKKTERA LKLAEEEMIR ARLEATSKMK
201: ELMEVHGAWL PRWLEVHMTH YKSLLEKHWE EHGKPAMNTM IQKAVEKKAQ AEVWAAPHIE TVKTKWMPAV EEQWVVMTTN LKPQMELVRT KGFEIYETSK
301: SAVTPHIVKV QELAKPHFQE LKKFSKPYID QVATATKPHV EKVRIAVKPY RDVAVHHYGK FLESATIYHN QLQGTVDKTL KKHELTRPLA TKEFVWFAAS
401: AVLALPVIIL FKLLSGIFCK KAKKPTRHGH SHHSRRKSKR AHTDK
101: KKGTLDSEEQ VGKARAQADQ LEKQVERLKE EAEMKNKEKR DFKAHIGETE KRVSELNLKV EKLEKTVEKQ KEKLKKTERA LKLAEEEMIR ARLEATSKMK
201: ELMEVHGAWL PRWLEVHMTH YKSLLEKHWE EHGKPAMNTM IQKAVEKKAQ AEVWAAPHIE TVKTKWMPAV EEQWVVMTTN LKPQMELVRT KGFEIYETSK
301: SAVTPHIVKV QELAKPHFQE LKKFSKPYID QVATATKPHV EKVRIAVKPY RDVAVHHYGK FLESATIYHN QLQGTVDKTL KKHELTRPLA TKEFVWFAAS
401: AVLALPVIIL FKLLSGIFCK KAKKPTRHGH SHHSRRKSKR AHTDK
001: MAAAKLVALL LLALLFTTSV FADADEPEVS EAAGSDGSSK IHLDQLNAKI RALESQIDEK TREVQGKDEV VAEKEKLLKE REDKIASLQT EVSSLQKKGS
101: SDSAKQLGKA QARADELEKQ VEVLKNFLEQ KNKEKDSTEA RTNEAEKKLR ELNSSLDKLQ KTNEEQKNKI GKLERAIKIA EEEMLRTKLE ATTKAKELLE
201: AHGSWLPPWL AVHWFKFQTY TETHWEAHGK PAVETVILKV TEAKAQAEKW AEPHVENVKT KYIPAIKETV TIHVEPHFRT LSIKAKEAYH SSKSAVSPHI
301: VTVQEFVDPY YQEAKKFSKP YVDQVATTTK PHVDKMKVAM KPYTTKVIIV YTEFLESATT YHNQVQAHVE RKLKSHELTE PFATNEFVWF AASALLVFPI
401: FVAYRVLSSL FCTKTKKPVK HPHHHGRRKA KRAHTDK
101: SDSAKQLGKA QARADELEKQ VEVLKNFLEQ KNKEKDSTEA RTNEAEKKLR ELNSSLDKLQ KTNEEQKNKI GKLERAIKIA EEEMLRTKLE ATTKAKELLE
201: AHGSWLPPWL AVHWFKFQTY TETHWEAHGK PAVETVILKV TEAKAQAEKW AEPHVENVKT KYIPAIKETV TIHVEPHFRT LSIKAKEAYH SSKSAVSPHI
301: VTVQEFVDPY YQEAKKFSKP YVDQVATTTK PHVDKMKVAM KPYTTKVIIV YTEFLESATT YHNQVQAHVE RKLKSHELTE PFATNEFVWF AASALLVFPI
401: FVAYRVLSSL FCTKTKKPVK HPHHHGRRKA KRAHTDK
Arabidopsis Description
AT4G31340 protein [Source:UniProtKB/TrEMBL;Acc:Q8GUN1]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.