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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 7
  • vacuole 5
  • plasma membrane 6
  • golgi 5
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:unclear
Any Predictor:nucleus, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:endoplasmic reticulum
 unclear: 26455813
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400038486 Potato endoplasmic reticulum 93.68 89.44
Solyc08g074290.2.1 Tomato nucleus 61.63 61.35
VIT_04s0008g02720.t01 Wine grape endoplasmic reticulum, extracellular, plasma membrane 55.76 55.01
KRH52641 Soybean endoplasmic reticulum 53.72 53.36
KRH61982 Soybean endoplasmic reticulum 51.92 52.63
Solyc05g010750.2.1 Tomato cytosol 14.67 51.59
Solyc05g010760.1.1 Tomato endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 11.96 50.96
AT2G24420.1 Thale cress endoplasmic reticulum, vacuole 50.56 50.91
AT4G31340.1 Thale cress endoplasmic reticulum 48.53 49.2
Os08t0519400-01 Rice plasma membrane 49.89 48.89
Zm00001d029841_P001 Maize cytosol 24.83 48.89
Bra011260.1-P Field mustard endoplasmic reticulum 48.08 48.63
CDY20313 Canola endoplasmic reticulum, plasma membrane, vacuole 46.73 48.14
CDY28257 Canola endoplasmic reticulum 47.4 47.95
CDX72304 Canola endoplasmic reticulum, plasma membrane, vacuole 46.95 47.82
HORVU7Hr1G052350.1 Barley cytosol, plasma membrane 44.47 47.82
CDX68735 Canola endoplasmic reticulum 47.63 47.74
CDY46149 Canola endoplasmic reticulum, extracellular, plasma membrane 46.28 47.67
KXG25592 Sorghum endoplasmic reticulum, golgi, plasma membrane 48.76 47.47
GSMUA_Achr10P... Banana endoplasmic reticulum 47.63 47.42
CDY34774 Canola endoplasmic reticulum, extracellular, plasma membrane 44.47 46.79
TraesCS7A01G253000.2 Wheat golgi 47.18 46.24
Os09t0497700-01 Rice plasma membrane 46.28 45.96
TraesCS7B01G149500.2 Wheat endoplasmic reticulum 46.5 45.58
Bra032096.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 46.28 45.56
Zm00001d049764_P001 Maize plasma membrane 46.5 45.18
GSMUA_Achr9P13940_001 Banana endoplasmic reticulum 44.24 44.24
Zm00001d031532_P001 Maize plasma membrane 44.7 43.71
GSMUA_Achr6P01760_001 Banana endoplasmic reticulum 43.79 43.69
Zm00001d024398_P001 Maize cytosol 12.64 42.42
OQU89720 Sorghum endoplasmic reticulum, extracellular, plasma membrane 43.79 42.27
Zm00001d005407_P001 Maize extracellular 27.09 42.11
Bra007856.1-P Field mustard endoplasmic reticulum, vacuole 43.34 42.01
TraesCS5B01G275100.2 Wheat endoplasmic reticulum, extracellular, plasma membrane 42.89 41.58
TraesCS5D01G283100.2 Wheat endoplasmic reticulum, extracellular, plasma membrane 42.66 41.18
TraesCS5A01G275800.2 Wheat endoplasmic reticulum 42.21 40.92
Solyc07g008970.2.1 Tomato endoplasmic reticulum, extracellular, plasma membrane 39.73 40.37
Zm00001d006052_P004 Maize endoplasmic reticulum 40.86 36.71
HORVU2Hr1G002290.5 Barley endoplasmic reticulum, extracellular 9.48 35.29
HORVU5Hr1G074800.2 Barley plastid 41.53 34.59
Bra024012.1-P Field mustard mitochondrion 46.95 33.12
CDY13424 Canola plasma membrane 46.95 32.25
Os04t0607150-00 Rice vacuole 25.73 31.23
CDY67576 Canola extracellular 6.77 29.7
TraesCS2A01G430700.2 Wheat golgi, vacuole 28.22 29.34
TraesCS2B01G451900.1 Wheat golgi, vacuole 27.77 29.22
TraesCS2D01G428600.1 Wheat golgi, vacuole 27.09 28.64
KXG27068 Sorghum plasma membrane 25.06 28.39
HORVU2Hr1G100500.17 Barley endoplasmic reticulum, golgi, mitochondrion, nucleus 25.51 24.51
Protein Annotations
EnsemblPlants:Solyc08g006030.2.1EnsemblPlantsGene:Solyc08g006030.2Gene3D:1.20.5.340GO:GO:0005575GO:GO:0016020GO:GO:0016021
ncoils:CoilPANTHER:PTHR34360PANTHER:PTHR34360:SF1SEG:segSignalP:SignalP-noTMSUPFAM:SSF57997
SUPFAM:SSF58113TMHMM:TMhelixUniParc:UPI000276BC65UniProt:K4CI92MapMan:35.2:
Description
No Description!
Coordinates
chr8:-:790657..797712
Molecular Weight (calculated)
49713.1 Da
IEP (calculated)
9.291
GRAVY (calculated)
-0.375
Length
443 amino acids
Sequence
(BLAST)
001: MASSMRLIFF TLLVFIALIF TQIKAEAEVK SVDDEVEVVE SHVSTSAELD NLKSKIQSLE SNVKDTATEL KKKDEVIANK EEMIKEKSES IASLLAQISS
101: LQEKGSLDAE EKVKKANARV DQLEKLVETL KKEVDMKNKE KKELGTQINE AEKRLTELNS KVEKLQKTVD EQEAKLRKTE RALQIAEEEM IRARSEATSK
201: AQQLGEVHGA WLPPWLAVQL THVQFLLEKH GKPAMDTVIQ KATEKKALAE TWAAPHVETI KTQWIPVAKE KWLVISTTAE PHVQLLTTRA LEIYKTSKGA
301: ITPHILKVQE LATPHVQGIK KFSKPYIDDV AAAAKPHVEK VRVAAKPYTE VAVHHYGKFL ESATTYHNQL QGTVKETLEN HDLTKSLATK ELIWFAASAL
401: LALPIIILFK FLSAIFCTKA KESDHNVTSP NSRRKAKRGH ADM
Best Arabidopsis Sequence Match ( AT2G24420.2 )
(BLAST)
001: MAAAKLVALL LLLALVFNFT TCIFADAGID GGDEPKLRSD GGDIELDQLN AKIRALESQI DDKTKELKGR EELVTEKEKL LQERQDKVAS LETEVSSLRK
101: KGSSDSVELL SKAQARATEL EKQVEVLKKF LEQKNKEKEL IEAQTSETEK KLNELNSRVE KLHKTNEEQK NKIRKLERAL KISEEEMLRT KHEATTKAKE
201: LMEVHGAWLP PWFAVHWSSF QTVAGTHWDA HGKPVMEKVT QKVTLAKNQA EKWAKPHMAN VKTKYIPAIK ETVKTHVEPH VQTLSTKAKE AYHASKSAVT
301: PHIVKFQEHV DPYYQEAKKF SKPYVDQVAT ATKPHVDKVR ATMKPYTTKT VHYYKEFLES ASTYHHQLQA NVESKLKSHE LLEPFATKEF IWFAASALLA
401: LPIFIVYKFL CSLFCTKTKK PIRQSHQHTR RKARRGHSDK
Arabidopsis Description
AT2G24420 protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQ26]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.