Factsheet for GSMUA_Achr6P01760_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
extracellular 4
golgi 4
plasma membrane 5
endoplasmic reticulum 6
vacuole 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	endoplasmic reticulum	71.17	71.01
GSMUA_Achr9P13940_001	Banana	endoplasmic reticulum	59.23	59.37
HORVU7Hr1G052350.1	Barley	cytosol, plasma membrane	50.9	54.85
Zm00001d029841_P001	Maize	cytosol	27.7	54.67
VIT_04s0008g02720.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	54.28	53.67
TraesCS7B01G149500.2	Wheat	endoplasmic reticulum	53.6	52.65
KXG25592	Sorghum	endoplasmic reticulum, golgi, plasma membrane	53.83	52.53
Zm00001d024398_P001	Maize	cytosol	15.54	52.27
KRH52641	Soybean	endoplasmic reticulum	52.48	52.24
TraesCS7A01G253000.2	Wheat	golgi	53.15	52.21
KRH61982	Soybean	endoplasmic reticulum	51.35	52.17
Os09t0497700-01	Rice	plasma membrane	52.25	52.02
Os08t0519400-01	Rice	plasma membrane	52.7	51.77
Zm00001d031532_P001	Maize	plasma membrane	52.25	51.21
Zm00001d049764_P001	Maize	plasma membrane	51.8	50.44
PGSC0003DMT400076024	Potato	cytosol, nucleus	29.5	49.25
Zm00001d005407_P001	Maize	extracellular	30.86	48.07
OQU89720	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	49.32	47.71
Solyc08g074290.2.1	Tomato	nucleus	47.52	47.42
TraesCS5D01G283100.2	Wheat	endoplasmic reticulum, extracellular, plasma membrane	47.75	46.19
TraesCS5A01G275800.2	Wheat	endoplasmic reticulum	47.52	46.17
TraesCS5B01G275100.2	Wheat	endoplasmic reticulum, extracellular, plasma membrane	47.52	46.17
AT2G24420.1	Thale cress	endoplasmic reticulum, vacuole	45.05	45.45
CDX72304	Canola	endoplasmic reticulum, plasma membrane, vacuole	44.37	45.29
CDY46149	Canola	endoplasmic reticulum, extracellular, plasma membrane	43.69	45.12
CDY20313	Canola	endoplasmic reticulum, plasma membrane, vacuole	43.69	45.12
AT4G31340.1	Thale cress	endoplasmic reticulum	44.37	45.08
CDX68735	Canola	endoplasmic reticulum	43.92	44.12
Bra011260.1-P	Field mustard	endoplasmic reticulum	43.47	44.06
CDY34774	Canola	endoplasmic reticulum, extracellular, plasma membrane	41.67	43.94
CDY28257	Canola	endoplasmic reticulum	43.24	43.84
Solyc08g006030.2.1	Tomato	unclear	43.69	43.79
Solyc07g008970.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	42.79	43.58
PGSC0003DMT400073989	Potato	extracellular, plasma membrane, vacuole	43.47	43.57
Bra032096.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	44.14	43.56
PGSC0003DMT400038486	Potato	endoplasmic reticulum	45.05	43.1
Zm00001d006052_P004	Maize	endoplasmic reticulum	45.72	41.18
HORVU5Hr1G074800.2	Barley	plastid	46.85	39.1
HORVU2Hr1G002290.5	Barley	endoplasmic reticulum, extracellular	10.36	38.66
Solyc05g010760.1.1	Tomato	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	9.01	38.46
Bra007856.1-P	Field mustard	endoplasmic reticulum, vacuole	39.41	38.29
Solyc05g010750.2.1	Tomato	cytosol	10.81	38.1
CDY12172	Canola	cytosol	8.33	37.0
Bra011163.1-P	Field mustard	plasma membrane	27.25	32.97
CDX68621	Canola	plasma membrane	28.6	32.82
CDY43554	Canola	plasma membrane	28.6	32.73
Os04t0607150-00	Rice	vacuole	26.8	32.6
AT4G30090.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	28.38	32.47
TraesCS2B01G451900.1	Wheat	golgi, vacuole	29.73	31.35
TraesCS2D01G428600.1	Wheat	golgi, vacuole	29.5	31.26
TraesCS2A01G430700.2	Wheat	golgi, vacuole	29.5	30.75
CDY67576	Canola	extracellular	6.76	29.7
Bra024012.1-P	Field mustard	mitochondrion	41.89	29.62
CDY13424	Canola	plasma membrane	41.89	28.84
KXG27068	Sorghum	plasma membrane	25.0	28.39
HORVU2Hr1G100500.17	Barley	endoplasmic reticulum, golgi, mitochondrion, nucleus	29.28	28.2
Bra001871.1-P	Field mustard	cytosol	12.39	20.0
CDX92946	Canola	cytosol	12.39	19.93
CDY24314	Canola	mitochondrion	5.86	13.54

Protein Annotations

EnsemblPlants:GSMUA_Achr6P01760_001	EnsemblPlants:GSMUA_Achr6T01760_001	EnsemblPlantsGene:GSMUA_Achr6G01760_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR34360	PANTHER:PTHR34360:SF1	SignalP:SignalP-noTM	SUPFAM:SSF58113	TMHMM:TMhelix
UniParc:UPI000295EFE9	UniProt:M0T3C4	MapMan:35.2	:	:	:

Description

DNA repair ATPase-related, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G01760_001]

Coordinates

chr6:+:1139092..1145051

Molecular Weight (calculated)

50850.7 Da

IEP (calculated)

10.296

GRAVY (calculated)

-0.509

Length

444 amino acids

Sequence
(BLAST)

001: MEASKLLIAS TVICLVFVGA WADAGAEEEV VVQHLAPDSA LKLELEQLRS KISALEASIL DRTRDLKSKD ETITHLEMII EEKSKTLLSL QSEIESVQKK
101: GAGDAEELVK KAHARAGELE KQMAKLRNDI ELQNKRRVAL DVQAGETEKK VGELNLKLEN LQKINDEQKR RIQKTEHALH VAEEELMRAQ LETRAKSKEL
201: SQAHGAWLPR WFAAHINRYL ELAATYWKHH AKPTLDVFLH KALEKSAQAQ KRMEPHLEMA KNKWIPAIKE RWVILATNAE PYVHTLSAKT VEVYHTSKDA
301: IATHVVKVQE LGGPYFQAAK RFSKPYIDQV ATITKPHFKK VQFALKPYKK RIVRAYGKFH KSATVYHHQV QAGIHEHLKK YELTKPLATK ELVWFMASAL
401: LALPIFLVYR FLSDILCSKN TRKPTRNAHG SHTHRRPKRR HPDK

Best Arabidopsis Sequence Match ( AT2G24420.2 )
(BLAST)

001: MAAAKLVALL LLLALVFNFT TCIFADAGID GGDEPKLRSD GGDIELDQLN AKIRALESQI DDKTKELKGR EELVTEKEKL LQERQDKVAS LETEVSSLRK
101: KGSSDSVELL SKAQARATEL EKQVEVLKKF LEQKNKEKEL IEAQTSETEK KLNELNSRVE KLHKTNEEQK NKIRKLERAL KISEEEMLRT KHEATTKAKE
201: LMEVHGAWLP PWFAVHWSSF QTVAGTHWDA HGKPVMEKVT QKVTLAKNQA EKWAKPHMAN VKTKYIPAIK ETVKTHVEPH VQTLSTKAKE AYHASKSAVT
301: PHIVKFQEHV DPYYQEAKKF SKPYVDQVAT ATKPHVDKVR ATMKPYTTKT VHYYKEFLES ASTYHHQLQA NVESKLKSHE LLEPFATKEF IWFAASALLA
401: LPIFIVYKFL CSLFCTKTKK PIRQSHQHTR RKARRGHSDK

Arabidopsis Description

AT2G24420 protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQ26]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.