Factsheet for GSMUA_Achr9P13940_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	endoplasmic reticulum	62.3	62.02
GSMUA_Achr6P01760_001	Banana	endoplasmic reticulum	59.37	59.23
HORVU7Hr1G052350.1	Barley	cytosol, plasma membrane	50.34	54.13
VIT_04s0008g02720.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	53.95	53.23
Zm00001d029841_P001	Maize	cytosol	26.86	52.89
TraesCS7B01G149500.2	Wheat	endoplasmic reticulum	52.82	51.77
TraesCS7A01G253000.2	Wheat	golgi	52.37	51.33
PGSC0003DMT400076024	Potato	cytosol, nucleus	30.7	51.13
KRH52641	Soybean	endoplasmic reticulum	51.24	50.9
KRH61982	Soybean	endoplasmic reticulum	50.11	50.8
Os08t0519400-01	Rice	plasma membrane	51.24	50.22
Os09t0497700-01	Rice	plasma membrane	50.11	49.78
KXG25592	Sorghum	endoplasmic reticulum, golgi, plasma membrane	50.79	49.45
Zm00001d049764_P001	Maize	plasma membrane	50.56	49.12
Zm00001d031532_P001	Maize	plasma membrane	48.76	47.68
Zm00001d005407_P001	Maize	extracellular	30.47	47.37
Solyc08g074290.2.1	Tomato	nucleus	47.18	46.97
OQU89720	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	48.53	46.84
CDY20313	Canola	endoplasmic reticulum, plasma membrane, vacuole	44.02	45.35
TraesCS5B01G275100.2	Wheat	endoplasmic reticulum, extracellular, plasma membrane	46.73	45.3
TraesCS5A01G275800.2	Wheat	endoplasmic reticulum	46.73	45.3
CDY46149	Canola	endoplasmic reticulum, extracellular, plasma membrane	43.79	45.12
TraesCS5D01G283100.2	Wheat	endoplasmic reticulum, extracellular, plasma membrane	46.28	44.66
AT2G24420.1	Thale cress	endoplasmic reticulum, vacuole	44.24	44.55
Solyc08g006030.2.1	Tomato	unclear	44.24	44.24
AT4G31340.1	Thale cress	endoplasmic reticulum	43.57	44.16
Zm00001d024398_P001	Maize	cytosol	13.09	43.94
CDY28257	Canola	endoplasmic reticulum	42.89	43.38
Bra011260.1-P	Field mustard	endoplasmic reticulum	42.89	43.38
Bra032096.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	44.02	43.33
CDX72304	Canola	endoplasmic reticulum, plasma membrane, vacuole	42.21	42.99
CDX68735	Canola	endoplasmic reticulum	42.66	42.76
PGSC0003DMT400038486	Potato	endoplasmic reticulum	44.47	42.46
Solyc07g008970.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	41.76	42.43
Solyc05g010750.2.1	Tomato	cytosol	11.96	42.06
CDY34774	Canola	endoplasmic reticulum, extracellular, plasma membrane	39.95	42.04
Zm00001d006052_P004	Maize	endoplasmic reticulum	45.6	40.97
PGSC0003DMT400073989	Potato	extracellular, plasma membrane, vacuole	40.63	40.63
HORVU5Hr1G074800.2	Barley	plastid	45.82	38.16
Bra007856.1-P	Field mustard	endoplasmic reticulum, vacuole	38.6	37.42
Os04t0607150-00	Rice	vacuole	29.12	35.34
HORVU2Hr1G002290.5	Barley	endoplasmic reticulum, extracellular	9.48	35.29
Solyc05g010760.1.1	Tomato	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	8.13	34.62
CDY12172	Canola	cytosol	7.67	34.0
TraesCS2B01G451900.1	Wheat	golgi, vacuole	32.05	33.73
TraesCS2D01G428600.1	Wheat	golgi, vacuole	31.83	33.65
TraesCS2A01G430700.2	Wheat	golgi, vacuole	31.83	33.1
HORVU2Hr1G100500.17	Barley	endoplasmic reticulum, golgi, mitochondrion, nucleus	32.05	30.8
CDY43554	Canola	plasma membrane	26.64	30.41
Bra011163.1-P	Field mustard	plasma membrane	25.06	30.25
CDX68621	Canola	plasma membrane	26.41	30.23
AT4G30090.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	26.41	30.15
KXG27068	Sorghum	plasma membrane	26.19	29.67
Bra024012.1-P	Field mustard	mitochondrion	41.53	29.3
CDY13424	Canola	plasma membrane	41.53	28.53
CDY67576	Canola	extracellular	5.87	25.74
Bra001871.1-P	Field mustard	cytosol	12.87	20.73
CDX92946	Canola	cytosol	12.87	20.65
CDY24314	Canola	mitochondrion	4.97	11.46

Protein Annotations

EnsemblPlants:GSMUA_Achr9P13940_001	EnsemblPlants:GSMUA_Achr9T13940_001	EnsemblPlantsGene:GSMUA_Achr9G13940_001	Gene3D:1.20.120.20	Gene3D:1.20.5.170	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	ncoils:Coil	PANTHER:PTHR34360	PANTHER:PTHR34360:SF1	SignalP:SignalP-noTM
SUPFAM:SSF57997	SUPFAM:SSF58113	TMHMM:TMhelix	UniParc:UPI0002959735	UniProt:M0U052	MapMan:35.2

Description

DNA repair ATPase-related, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G13940_001]

Coordinates

chr9:-:9030711..9040726

Molecular Weight (calculated)

50595.3 Da

IEP (calculated)

9.934

GRAVY (calculated)

-0.477

Length

443 amino acids

Sequence
(BLAST)

001: MGASRLVIAS IVFFLLVAGV WAEEAAIGDG IVEPEPSDSA LKRELELLRS KIQDLEIGIS DRTRELNNRD DRIKNLEKII QEKSATISTL NGQIESLQKK
101: GALDAEELLG KAYTRAAGLE KQVDNLRNEL ETQSNNRGAL EARASEAEKK VRELILKLEN LEKTNDEQKH LIRKTERALQ VAKEELIIVQ LEATAKLEEL
201: TKIHGAWLPP WFATHISYCQ NLVETHWKEH GKPALDVVLQ KASDKSAQAQ KWLEPHLEIV KTRWVPAVKE RWVILVTSAE PYVQQVSTKT MEVYETSKNT
301: IAPHVEKVQK VADPYLQEAK KLSKPYIDQV ATVTKPHVEK VRITLKPYTK RVVHVYRKLH KSVAAYHRQV EASIKEHLKK HELTEPLVTK ELVWYMASAT
401: LALAIFCVYR LVACILWSKM RKSTQNGQTK NAHRRPKRRH ADK

Best Arabidopsis Sequence Match ( AT2G24420.2 )
(BLAST)

001: MAAAKLVALL LLLALVFNFT TCIFADAGID GGDEPKLRSD GGDIELDQLN AKIRALESQI DDKTKELKGR EELVTEKEKL LQERQDKVAS LETEVSSLRK
101: KGSSDSVELL SKAQARATEL EKQVEVLKKF LEQKNKEKEL IEAQTSETEK KLNELNSRVE KLHKTNEEQK NKIRKLERAL KISEEEMLRT KHEATTKAKE
201: LMEVHGAWLP PWFAVHWSSF QTVAGTHWDA HGKPVMEKVT QKVTLAKNQA EKWAKPHMAN VKTKYIPAIK ETVKTHVEPH VQTLSTKAKE AYHASKSAVT
301: PHIVKFQEHV DPYYQEAKKF SKPYVDQVAT ATKPHVDKVR ATMKPYTTKT VHYYKEFLES ASTYHHQLQA NVESKLKSHE LLEPFATKEF IWFAASALLA
401: LPIFIVYKFL CSLFCTKTKK PIRQSHQHTR RKARRGHSDK

Arabidopsis Description

AT2G24420 protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQ26]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.