Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 7
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43554 | Canola | plasma membrane | 96.64 | 96.39 |
| Bra011163.1-P | Field mustard | plasma membrane | 90.96 | 95.91 |
| AT4G30090.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 72.35 | 72.16 |
| CDY12172 | Canola | cytosol | 18.6 | 72.0 |
| Zm00001d029841_P001 | Maize | cytosol | 18.35 | 31.56 |
| CDX92946 | Canola | cytosol | 20.67 | 28.99 |
| HORVU7Hr1G052350.1 | Barley | cytosol, plasma membrane | 30.75 | 28.88 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 33.07 | 28.76 |
| GSMUA_Achr6P01760_001 | Banana | endoplasmic reticulum | 32.82 | 28.6 |
| KXG25592 | Sorghum | endoplasmic reticulum, golgi, plasma membrane | 33.33 | 28.35 |
| Zm00001d031532_P001 | Maize | plasma membrane | 32.56 | 27.81 |
| HORVU2Hr1G002290.5 | Barley | endoplasmic reticulum, extracellular | 8.53 | 27.73 |
| Os09t0497700-01 | Rice | plasma membrane | 31.78 | 27.58 |
| TraesCS7A01G253000.2 | Wheat | golgi | 32.04 | 27.43 |
| Os08t0519400-01 | Rice | plasma membrane | 31.27 | 26.77 |
| TraesCS7B01G149500.2 | Wheat | endoplasmic reticulum | 31.01 | 26.55 |
| PGSC0003DMT400073989 | Potato | extracellular, plasma membrane, vacuole | 30.23 | 26.41 |
| GSMUA_Achr9P13940_001 | Banana | endoplasmic reticulum | 30.23 | 26.41 |
| Solyc07g008970.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 29.72 | 26.38 |
| CDY34774 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 28.68 | 26.37 |
| TraesCS5D01G283100.2 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 31.27 | 26.36 |
| CDY46149 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 29.2 | 26.28 |
| TraesCS5B01G275100.2 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 31.01 | 26.26 |
| TraesCS5A01G275800.2 | Wheat | endoplasmic reticulum | 31.01 | 26.26 |
| OQU89720 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 31.01 | 26.14 |
| CDY20313 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 28.94 | 26.05 |
| CDX72304 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 29.2 | 25.98 |
| Zm00001d005407_P001 | Maize | extracellular | 19.12 | 25.96 |
| Zm00001d049764_P001 | Maize | plasma membrane | 30.49 | 25.88 |
| CDY28257 | Canola | endoplasmic reticulum | 28.94 | 25.57 |
| CDX68735 | Canola | endoplasmic reticulum | 28.42 | 24.89 |
| Zm00001d006052_P004 | Maize | endoplasmic reticulum | 30.75 | 24.14 |
| HORVU5Hr1G074800.2 | Barley | plastid | 30.23 | 21.99 |
| KXG27068 | Sorghum | plasma membrane | 21.71 | 21.48 |
| Os04t0607150-00 | Rice | vacuole | 20.16 | 21.37 |
| TraesCS2B01G451900.1 | Wheat | golgi, vacuole | 22.48 | 20.67 |
| TraesCS2D01G428600.1 | Wheat | golgi, vacuole | 22.22 | 20.53 |
| TraesCS2A01G430700.2 | Wheat | golgi, vacuole | 22.22 | 20.19 |
| CDY67576 | Canola | extracellular | 5.17 | 19.8 |
| Zm00001d024398_P001 | Maize | cytosol | 6.46 | 18.94 |
| HORVU2Hr1G100500.17 | Barley | endoplasmic reticulum, golgi, mitochondrion, nucleus | 20.93 | 17.57 |
| CDY24314 | Canola | mitochondrion | 8.53 | 17.19 |
| CDY13424 | Canola | plasma membrane | 27.39 | 16.43 |
Protein Annotations
| EnsemblPlants:CDX68621 | EnsemblPlantsGene:GSBRNA2T00130265001 | GO:A0A078BUW9 | ncoils:Coil | PANTHER:PTHR34360 | PANTHER:PTHR34360:SF1 |
| ProteinID:CDX68621 | ProteinID:CDX68621.1 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF58113 | TMHMM:TMhelix |
| UniParc:UPI0004EDAF5A | MapMan:35.2 | : | : | : | : |
Description
BnaC01g08320D
Coordinates
chrLK031789:-:218110..220857
Molecular Weight (calculated)
44779.9 Da
IEP (calculated)
9.593
GRAVY (calculated)
-0.512
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFSKPLFFL VLLTLSLSRE VASSSSSSEN NGCSNGAHEH CSVDELKSTV SSLQSIIKEK NQELHSKEEQ IRVLELYIRE KSYLFETDID FIQSENPVKH
101: GSEAEEKVYE LEKQVLRLKG EVELQRNKRL QVEARAETAD EKVEEFNSKI DMKWFFSKLG LKPNKTQAYL KTLWHQHLSP NLHITLQQVS LKIKQVQKWS
201: EPHIETMSSK WIPSIKEACV TLTIYLEPKV HYLTEKSIEV LSMSKQAFTP HIIQGFDVSR YYLEVIRTHT SPYTSQIMTI AKPHLEKVQV ALEPYTEHVR
301: HGFKKLVDST KVYHQQAQEM LKNNEITKPV ATMDLAWVGA TALIGFPLIF IIKFLSAVSN PKGKRRYNHK QEPSTGYRRA KRRHPHH
101: GSEAEEKVYE LEKQVLRLKG EVELQRNKRL QVEARAETAD EKVEEFNSKI DMKWFFSKLG LKPNKTQAYL KTLWHQHLSP NLHITLQQVS LKIKQVQKWS
201: EPHIETMSSK WIPSIKEACV TLTIYLEPKV HYLTEKSIEV LSMSKQAFTP HIIQGFDVSR YYLEVIRTHT SPYTSQIMTI AKPHLEKVQV ALEPYTEHVR
301: HGFKKLVDST KVYHQQAQEM LKNNEITKPV ATMDLAWVGA TALIGFPLIF IIKFLSAVSN PKGKRRYNHK QEPSTGYRRA KRRHPHH
001: MAFFKLLLFL FLVTLQIASF TGNGEASSSS SENNGCNGDQ NHLLNELKST VSALQSIIKE KNQELLSKEE KIRGLELYIR EKPYLFESEI DFSQFENPVK
101: HASEVEEKVY ELQKQVFGLK REVETQRKRR LEVEAELADK KVAQLSSKLE NIDGWFLSKL GLNPTESQAY LMTLWHQHLS PTLHTTLQMV SMKIEQVQKW
201: SEPHIETLNS QWIPSIKDAC VTITIYLEPK VQYITDKSIE LLYTSKQALT PHLIQGFDAS YYYLEVIRTH THPYTTRIMT LTKPHLERVQ VALEPYTENV
301: RHGFQKLVNS TKIYHQQAQE MLKNNEITKP VATMDLAWVG ATALIGFPLI FIIKLLSAVS NPKGKKRHNH KKEPTTGYRR AKRRHPHQ
101: HASEVEEKVY ELQKQVFGLK REVETQRKRR LEVEAELADK KVAQLSSKLE NIDGWFLSKL GLNPTESQAY LMTLWHQHLS PTLHTTLQMV SMKIEQVQKW
201: SEPHIETLNS QWIPSIKDAC VTITIYLEPK VQYITDKSIE LLYTSKQALT PHLIQGFDAS YYYLEVIRTH THPYTTRIMT LTKPHLERVQ VALEPYTENV
301: RHGFQKLVNS TKIYHQQAQE MLKNNEITKP VATMDLAWVG ATALIGFPLI FIIKLLSAVS NPKGKKRHNH KKEPTTGYRR AKRRHPHQ
Arabidopsis Description
Golgin family A protein [Source:UniProtKB/TrEMBL;Acc:F4JPI4]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.