CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011163.1-P	Field mustard	plasma membrane	91.75	97.0
CDX68621	Canola	plasma membrane	96.39	96.64
AT4G30090.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	71.91	71.91
CDY12172	Canola	cytosol	18.3	71.0
Zm00001d029841_P001	Maize	cytosol	18.04	31.11
HORVU7Hr1G052350.1	Barley	cytosol, plasma membrane	30.93	29.13
GSMUA_Achr10P...	Banana	endoplasmic reticulum	33.25	28.99
GSMUA_Achr6P01760_001	Banana	endoplasmic reticulum	32.73	28.6
CDX92946	Canola	cytosol	20.1	28.26
KXG25592	Sorghum	endoplasmic reticulum, golgi, plasma membrane	32.99	28.13
TraesCS7A01G253000.2	Wheat	golgi	32.47	27.88
Os09t0497700-01	Rice	plasma membrane	31.96	27.8
HORVU2Hr1G002290.5	Barley	endoplasmic reticulum, extracellular	8.51	27.73
Zm00001d031532_P001	Maize	plasma membrane	32.22	27.59
TraesCS7B01G149500.2	Wheat	endoplasmic reticulum	31.44	26.99
Os08t0519400-01	Rice	plasma membrane	31.44	26.99
TraesCS5B01G275100.2	Wheat	endoplasmic reticulum, extracellular, plasma membrane	31.7	26.91
TraesCS5A01G275800.2	Wheat	endoplasmic reticulum	31.7	26.91
PGSC0003DMT400073989	Potato	extracellular, plasma membrane, vacuole	30.67	26.86
CDY34774	Canola	endoplasmic reticulum, extracellular, plasma membrane	29.12	26.84
TraesCS5D01G283100.2	Wheat	endoplasmic reticulum, extracellular, plasma membrane	31.7	26.8
CDY46149	Canola	endoplasmic reticulum, extracellular, plasma membrane	29.64	26.74
GSMUA_Achr9P13940_001	Banana	endoplasmic reticulum	30.41	26.64
Solyc07g008970.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	29.9	26.61
CDY20313	Canola	endoplasmic reticulum, plasma membrane, vacuole	29.38	26.51
CDX72304	Canola	endoplasmic reticulum, plasma membrane, vacuole	29.38	26.21
OQU89720	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	30.67	25.93
Zm00001d049764_P001	Maize	plasma membrane	30.15	25.66
Zm00001d005407_P001	Maize	extracellular	18.81	25.61
CDY28257	Canola	endoplasmic reticulum	28.87	25.57
CDX68735	Canola	endoplasmic reticulum	28.35	24.89
Zm00001d006052_P004	Maize	endoplasmic reticulum	30.15	23.73
HORVU5Hr1G074800.2	Barley	plastid	30.67	22.37
Os04t0607150-00	Rice	vacuole	20.36	21.64
KXG27068	Sorghum	plasma membrane	21.39	21.23
TraesCS2B01G451900.1	Wheat	golgi, vacuole	22.16	20.43
TraesCS2D01G428600.1	Wheat	golgi, vacuole	21.91	20.29
TraesCS2A01G430700.2	Wheat	golgi, vacuole	21.91	19.95
CDY67576	Canola	extracellular	5.15	19.8
Zm00001d024398_P001	Maize	cytosol	6.44	18.94
HORVU2Hr1G100500.17	Barley	endoplasmic reticulum, golgi, mitochondrion, nucleus	20.62	17.35
CDY13424	Canola	plasma membrane	27.84	16.74
CDY24314	Canola	mitochondrion	7.99	16.15

Protein Annotations

EnsemblPlants:CDY43554	EnsemblPlantsGene:GSBRNA2T00076846001	GO:A0A078I1T1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR34360	PANTHER:PTHR34360:SF1	ProteinID:CDY43554	ProteinID:CDY43554.1	SEG:seg
SignalP:SignalP-noTM	SUPFAM:SSF58113	TMHMM:TMhelix	UniParc:UPI0004EDD2C7	UniProt:A0A078I1T1	MapMan:35.2

Description

BnaA01g06900DBnaA01g06900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1T1]

Coordinates

chrLK032560:-:252936..255700

Molecular Weight (calculated)

44799.8 Da

IEP (calculated)

9.652

GRAVY (calculated)

-0.527

Length

388 amino acids

Sequence
(BLAST)

001: MAFSKPLFFL VLLTLSLSRE VASSSSSSSE NNGCSNGAHE HCSVDELKST VSSLQSIIKE KNQELNSKEE QIRVLELYIR EKSYLFETDI DFTQSENPVK
101: HGSEAEEKVY ELEKQVLRLK GEVELQRNKR LQVEARAETA DEKVEEFNSK IDVKWFFSKL GLKPKKTQAY LKTLWHQHLS PNLHITLQQV SLKIKQVQKW
201: SEPHIETMNS KWIPSIKEAC VTLTIYLEPK VHYLTEKSIE VLSMSKQAFT PHIIQGYDVS RYYLEVIRTH TAPYTSQVMT IAKPHLEKVQ VALEPYTEHV
301: RHGFKKLVDS TKVYHQQAQE MLKNNEITKP VATMDLAWVG ATALIGFPLI FIIKFLSAVS NPKGKRRYSH KQEPSTGYRR AKRRHPHH

Best Arabidopsis Sequence Match ( AT4G30090.1 )
(BLAST)

001: MAFFKLLLFL FLVTLQIASF TGNGEASSSS SENNGCNGDQ NHLLNELKST VSALQSIIKE KNQELLSKEE KIRGLELYIR EKPYLFESEI DFSQFENPVK
101: HASEVEEKVY ELQKQVFGLK REVETQRKRR LEVEAELADK KVAQLSSKLE NIDGWFLSKL GLNPTESQAY LMTLWHQHLS PTLHTTLQMV SMKIEQVQKW
201: SEPHIETLNS QWIPSIKDAC VTITIYLEPK VQYITDKSIE LLYTSKQALT PHLIQGFDAS YYYLEVIRTH THPYTTRIMT LTKPHLERVQ VALEPYTENV
301: RHGFQKLVNS TKIYHQQAQE MLKNNEITKP VATMDLAWVG ATALIGFPLI FIIKLLSAVS NPKGKKRHNH KKEPTTGYRR AKRRHPHQ

Arabidopsis Description

Golgin family A protein [Source:UniProtKB/TrEMBL;Acc:F4JPI4]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.