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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, plasma membrane, endoplasmic reticulum

Predictor Summary:
  • extracellular 6
  • golgi 5
  • plasma membrane 6
  • endoplasmic reticulum 6
  • vacuole 5
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:endoplasmic reticulum
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY20313 Canola endoplasmic reticulum, plasma membrane, vacuole 92.79 92.79
Bra032096.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 94.65 90.44
CDY34774 Canola endoplasmic reticulum, extracellular, plasma membrane 80.93 82.66
AT2G24420.1 Thale cress endoplasmic reticulum, vacuole 79.77 77.95
CDX72304 Canola endoplasmic reticulum, plasma membrane, vacuole 68.14 67.36
CDY28257 Canola endoplasmic reticulum 67.67 66.44
CDX68735 Canola endoplasmic reticulum 67.67 65.84
CDY67576 Canola extracellular 14.88 63.37
PGSC0003DMT400076024 Potato cytosol, nucleus 32.56 52.63
KRH52641 Soybean endoplasmic reticulum 53.26 51.35
KRH61982 Soybean endoplasmic reticulum 51.4 50.57
Zm00001d029841_P001 Maize cytosol 25.81 49.33
VIT_04s0008g02720.t01 Wine grape endoplasmic reticulum, extracellular, plasma membrane 50.47 48.33
Solyc08g074290.2.1 Tomato nucleus 50.0 48.31
HORVU7Hr1G052350.1 Barley cytosol, plasma membrane 44.42 46.36
Solyc08g006030.2.1 Tomato unclear 47.67 46.28
Os09t0497700-01 Rice plasma membrane 46.28 44.62
PGSC0003DMT400038486 Potato endoplasmic reticulum 47.91 44.4
GSMUA_Achr10P... Banana endoplasmic reticulum 45.58 44.04
GSMUA_Achr9P13940_001 Banana endoplasmic reticulum 45.12 43.79
GSMUA_Achr6P01760_001 Banana endoplasmic reticulum 45.12 43.69
CDY13424 Canola plasma membrane 65.35 43.57
KXG25592 Sorghum endoplasmic reticulum, golgi, plasma membrane 46.05 43.52
Os08t0519400-01 Rice plasma membrane 45.58 43.36
Zm00001d005407_P001 Maize extracellular 28.6 43.16
TraesCS7B01G149500.2 Wheat endoplasmic reticulum 45.12 42.92
TraesCS7A01G253000.2 Wheat golgi 44.65 42.48
Solyc05g010760.1.1 Tomato endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 10.23 42.31
Zm00001d049764_P001 Maize plasma membrane 44.19 41.67
Zm00001d031532_P001 Maize plasma membrane 42.79 40.62
OQU89720 Sorghum endoplasmic reticulum, extracellular, plasma membrane 43.26 40.52
TraesCS5B01G275100.2 Wheat endoplasmic reticulum, extracellular, plasma membrane 42.79 40.26
Solyc05g010750.2.1 Tomato cytosol 11.63 39.68
TraesCS5D01G283100.2 Wheat endoplasmic reticulum, extracellular, plasma membrane 42.33 39.65
TraesCS5A01G275800.2 Wheat endoplasmic reticulum 42.09 39.61
Zm00001d024398_P001 Maize cytosol 11.63 37.88
Zm00001d006052_P004 Maize endoplasmic reticulum 42.33 36.92
HORVU2Hr1G002290.5 Barley endoplasmic reticulum, extracellular 10.0 36.13
HORVU5Hr1G074800.2 Barley plastid 41.4 33.46
Os04t0607150-00 Rice vacuole 27.44 32.33
CDY12172 Canola cytosol 7.44 32.0
TraesCS2D01G428600.1 Wheat golgi, vacuole 29.53 30.31
TraesCS2B01G451900.1 Wheat golgi, vacuole 29.3 29.93
CDY43554 Canola plasma membrane 26.74 29.64
TraesCS2A01G430700.2 Wheat golgi, vacuole 29.3 29.58
CDX68621 Canola plasma membrane 26.28 29.2
KXG27068 Sorghum plasma membrane 25.35 27.88
HORVU2Hr1G100500.17 Barley endoplasmic reticulum, golgi, mitochondrion, nucleus 28.6 26.68
CDX92946 Canola cytosol 11.63 18.12
CDY24314 Canola mitochondrion 6.51 14.58
Protein Annotations
EnsemblPlants:CDY46149EnsemblPlantsGene:GSBRNA2T00083326001Gene3D:1.20.120.20GO:A0A078I9Z4GO:GO:0005575GO:GO:0016020
GO:GO:0016021ncoils:CoilPANTHER:PTHR34360PANTHER:PTHR34360:SF1ProteinID:CDY46149ProteinID:CDY46149.1
SEG:segSignalP:SignalP-noTMSUPFAM:SSF58113TMHMM:TMhelixUniParc:UPI0004EEB08DUniProt:A0A078I9Z4
MapMan:35.2:::::
Description
BnaA04g14370DBnaA04g14370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I9Z4]
Coordinates
chrLK032651:+:139346..142733
Molecular Weight (calculated)
49720.7 Da
IEP (calculated)
10.376
GRAVY (calculated)
-0.760
Length
430 amino acids
Sequence
(BLAST)
001: MAAAKLAPLL LLFLFVFTTG EERTSAGSVD SASEIQLDQL NAKIRALESQ IEEKSREVKG REELVADKDK LLHERQDKLS SLETQLSSLR KKGSSDSVQV
101: LEKAKARATE LEKQVEVLRN FLEQKNKEKE STEARRSEAE KKLNELNSRL EKLHKTKEEQ KGKIRKLERA LKISEEEMLR MRHEAATKAR ELQEVHGSWL
201: PHWLAVHWVH FQTVTGTHWD AHGKPVMEKV TQKVTQAKTQ AEKWAEPHMV NVKTKYIPAI KETVKTHVEP HVQTLSTKAK EAYHASKSAV TPHIVKFQEH
301: VDPYYQEAKK FSKPYVDQVA TATKPHVDKV RATMKPYTKK AVHYYKEFLK TATTYHHQVQ GNIERKLKSH ELAAPFATKE FIWFTASALL ALPIFVVYKF
401: LCSLFWQTKK PARHSHRHAR RRAKRDHSDK
Best Arabidopsis Sequence Match ( AT2G24420.2 )
(BLAST)
001: MAAAKLVALL LLLALVFNFT TCIFADAGID GGDEPKLRSD GGDIELDQLN AKIRALESQI DDKTKELKGR EELVTEKEKL LQERQDKVAS LETEVSSLRK
101: KGSSDSVELL SKAQARATEL EKQVEVLKKF LEQKNKEKEL IEAQTSETEK KLNELNSRVE KLHKTNEEQK NKIRKLERAL KISEEEMLRT KHEATTKAKE
201: LMEVHGAWLP PWFAVHWSSF QTVAGTHWDA HGKPVMEKVT QKVTLAKNQA EKWAKPHMAN VKTKYIPAIK ETVKTHVEPH VQTLSTKAKE AYHASKSAVT
301: PHIVKFQEHV DPYYQEAKKF SKPYVDQVAT ATKPHVDKVR ATMKPYTTKT VHYYKEFLES ASTYHHQLQA NVESKLKSHE LLEPFATKEF IWFAASALLA
401: LPIFIVYKFL CSLFCTKTKK PIRQSHQHTR RKARRGHSDK
Arabidopsis Description
AT2G24420 protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQ26]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.