Subcellular Localization
min:
: max
Winner_takes_all: golgi, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 4
- golgi 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G428600.1 | Wheat | golgi, vacuole | 91.08 | 92.6 |
| TraesCS2B01G451900.1 | Wheat | golgi, vacuole | 89.2 | 90.26 |
| HORVU2Hr1G100500.17 | Barley | endoplasmic reticulum, golgi, mitochondrion, nucleus | 77.93 | 72.02 |
| Os04t0607150-00 | Rice | vacuole | 47.42 | 55.34 |
| KXG27068 | Sorghum | plasma membrane | 46.24 | 50.38 |
| GSMUA_Achr9P13940_001 | Banana | endoplasmic reticulum | 33.1 | 31.83 |
| TraesCS5A01G275800.2 | Wheat | endoplasmic reticulum | 32.39 | 30.2 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 30.99 | 29.66 |
| GSMUA_Achr6P01760_001 | Banana | endoplasmic reticulum | 30.75 | 29.5 |
| PGSC0003DMT400076024 | Potato | cytosol, nucleus | 18.31 | 29.32 |
| CDY46149 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 29.58 | 29.3 |
| CDY20313 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 29.34 | 29.07 |
| AT2G24420.1 | Thale cress | endoplasmic reticulum, vacuole | 29.81 | 28.86 |
| TraesCS7A01G253000.2 | Wheat | golgi | 30.52 | 28.76 |
| CDY34774 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 28.4 | 28.74 |
| VIT_04s0008g02720.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 30.28 | 28.73 |
| KRH52641 | Soybean | endoplasmic reticulum | 29.81 | 28.48 |
| Bra011260.1-P | Field mustard | endoplasmic reticulum | 29.11 | 28.31 |
| Solyc08g006030.2.1 | Tomato | unclear | 29.34 | 28.22 |
| CDX72304 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 28.64 | 28.05 |
| CDY28257 | Canola | endoplasmic reticulum | 28.64 | 27.85 |
| CDX68735 | Canola | endoplasmic reticulum | 28.87 | 27.83 |
| AT4G31340.1 | Thale cress | endoplasmic reticulum | 28.4 | 27.69 |
| Bra032096.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 28.87 | 27.33 |
| KRH61982 | Soybean | endoplasmic reticulum | 27.93 | 27.23 |
| PGSC0003DMT400038486 | Potato | endoplasmic reticulum | 28.64 | 26.29 |
| Bra007856.1-P | Field mustard | endoplasmic reticulum, vacuole | 28.17 | 26.26 |
| Solyc05g010750.2.1 | Tomato | cytosol | 7.75 | 26.19 |
| Solyc08g074290.2.1 | Tomato | nucleus | 27.0 | 25.84 |
| Solyc07g008970.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 25.12 | 24.54 |
| PGSC0003DMT400073989 | Potato | extracellular, plasma membrane, vacuole | 25.35 | 24.38 |
| CDX68621 | Canola | plasma membrane | 20.19 | 22.22 |
| Solyc05g010760.1.1 | Tomato | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 5.4 | 22.12 |
| CDY12172 | Canola | cytosol | 5.16 | 22.0 |
| CDY43554 | Canola | plasma membrane | 19.95 | 21.91 |
| Bra011163.1-P | Field mustard | plasma membrane | 18.78 | 21.8 |
| AT4G30090.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 19.48 | 21.39 |
| Bra024012.1-P | Field mustard | mitochondrion | 27.7 | 18.79 |
| CDY13424 | Canola | plasma membrane | 27.7 | 18.29 |
| CDX92946 | Canola | cytosol | 9.86 | 15.22 |
| Bra001871.1-P | Field mustard | cytosol | 9.62 | 14.91 |
| CDY67576 | Canola | extracellular | 3.29 | 13.86 |
| CDY24314 | Canola | mitochondrion | 5.4 | 11.98 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G430700.2 | EnsemblPlantsGene:TraesCS2A01G430700 | ncoils:Coil | PANTHER:PTHR34360 | PANTHER:PTHR34360:SF5 | PFscan:PS51257 |
| SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF58113 | TMHMM:TMhelix | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr2A:+:684120272..684123074
Molecular Weight (calculated)
47860.3 Da
IEP (calculated)
8.624
GRAVY (calculated)
-0.448
Length
426 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGDRRALCL VAGAILLCSC FARVLCGDEQ EQQQEIQRLR SKVASLEDEV GWRKEETSQL ESVVRERTAQ IAALVGGLEA MQVRNVADDE SVVKASTNSA
101: MIEKQDTKGE QIERLGSDLE DQVKKGELLE TRASEAEKSL LELGQKLDRV EKINAEQRKK IEELEQDLQH SKDKLSGVQR QAKLKAQELA NVHGMWLPYW
201: FASRSVHCQE LASAKWHLHG KPVLDALLEK VAETLAHAQR LVEPHLQATK NKLVPVAKFH FNSLKNSTKP VAARMATAYR ACKDAIQPCM VKSQEFADHY
301: WQECRKFSEP HVARIAAASE PHLSAVAAVE PYTRPVKSVW RQLVMATSFY HSQVQKGISG FLEDSELLDQ LSAYRLAWWM ASAMFALPML YACKIFSATV
401: RKKNQARADR GGGTSSSRKH ARRVEE
101: MIEKQDTKGE QIERLGSDLE DQVKKGELLE TRASEAEKSL LELGQKLDRV EKINAEQRKK IEELEQDLQH SKDKLSGVQR QAKLKAQELA NVHGMWLPYW
201: FASRSVHCQE LASAKWHLHG KPVLDALLEK VAETLAHAQR LVEPHLQATK NKLVPVAKFH FNSLKNSTKP VAARMATAYR ACKDAIQPCM VKSQEFADHY
301: WQECRKFSEP HVARIAAASE PHLSAVAAVE PYTRPVKSVW RQLVMATSFY HSQVQKGISG FLEDSELLDQ LSAYRLAWWM ASAMFALPML YACKIFSATV
401: RKKNQARADR GGGTSSSRKH ARRVEE
001: MAAAKLVALL LLLALVFNFT TCIFADAGID GGDEPKLRSD GGDIELDQLN AKIRALESQI DDKTKELKGR EELVTEKEKL LQERQDKVAS LETEVSSLRK
101: KGSSDSVELL SKAQARATEL EKQVEVLKKF LEQKNKEKEL IEAQTSETEK KLNELNSRVE KLHKTNEEQK NKIRKLERAL KISEEEMLRT KHEATTKAKE
201: LMEVHGAWLP PWFAVHWSSF QTVAGTHWDA HGKPVMEKVT QKVTLAKNQA EKWAKPHMAN VKTKYIPAIK ETVKTHVEPH VQTLSTKAKE AYHASKSAVT
301: PHIVKFQEHV DPYYQEAKKF SKPYVDQVAT ATKPHVDKVR ATMKPYTTKT VHYYKEFLES ASTYHHQLQA NVESKLKSHE LLEPFATKEF IWFAASALLA
401: LPIFIVYKFL CSLFCTKTKK PIRQSHQHTR RKARRGHSDK
101: KGSSDSVELL SKAQARATEL EKQVEVLKKF LEQKNKEKEL IEAQTSETEK KLNELNSRVE KLHKTNEEQK NKIRKLERAL KISEEEMLRT KHEATTKAKE
201: LMEVHGAWLP PWFAVHWSSF QTVAGTHWDA HGKPVMEKVT QKVTLAKNQA EKWAKPHMAN VKTKYIPAIK ETVKTHVEPH VQTLSTKAKE AYHASKSAVT
301: PHIVKFQEHV DPYYQEAKKF SKPYVDQVAT ATKPHVDKVR ATMKPYTTKT VHYYKEFLES ASTYHHQLQA NVESKLKSHE LLEPFATKEF IWFAASALLA
401: LPIFIVYKFL CSLFCTKTKK PIRQSHQHTR RKARRGHSDK
Arabidopsis Description
AT2G24420 protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQ26]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.