Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 5
- vacuole 5
- plasma membrane 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68621 | Canola | plasma membrane | 72.16 | 72.35 |
| CDY43554 | Canola | plasma membrane | 71.91 | 71.91 |
| Bra011163.1-P | Field mustard | plasma membrane | 67.53 | 71.39 |
| CDY12172 | Canola | cytosol | 15.46 | 60.0 |
| Zm00001d029841_P001 | Maize | cytosol | 17.27 | 29.78 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 33.51 | 29.21 |
| HORVU7Hr1G052350.1 | Barley | cytosol, plasma membrane | 30.67 | 28.88 |
| GSMUA_Achr6P01760_001 | Banana | endoplasmic reticulum | 32.47 | 28.38 |
| Solyc07g008970.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 31.7 | 28.21 |
| Os09t0497700-01 | Rice | plasma membrane | 31.96 | 27.8 |
| PGSC0003DMT400073989 | Potato | extracellular, plasma membrane, vacuole | 31.7 | 27.77 |
| KXG25592 | Sorghum | endoplasmic reticulum, golgi, plasma membrane | 32.47 | 27.69 |
| Zm00001d031532_P001 | Maize | plasma membrane | 31.7 | 27.15 |
| Os08t0519400-01 | Rice | plasma membrane | 31.19 | 26.77 |
| TraesCS7A01G253000.2 | Wheat | golgi | 30.93 | 26.55 |
| AT4G31340.1 | Thale cress | endoplasmic reticulum | 29.9 | 26.54 |
| GSMUA_Achr9P13940_001 | Banana | endoplasmic reticulum | 30.15 | 26.41 |
| TraesCS7B01G149500.2 | Wheat | endoplasmic reticulum | 30.41 | 26.11 |
| HORVU2Hr1G002290.5 | Barley | endoplasmic reticulum, extracellular | 7.99 | 26.05 |
| Zm00001d005407_P001 | Maize | extracellular | 19.07 | 25.96 |
| OQU89720 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 30.41 | 25.71 |
| TraesCS5D01G283100.2 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 30.15 | 25.49 |
| TraesCS5B01G275100.2 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 29.9 | 25.38 |
| TraesCS5A01G275800.2 | Wheat | endoplasmic reticulum | 29.64 | 25.16 |
| Zm00001d049764_P001 | Maize | plasma membrane | 29.12 | 24.78 |
| Zm00001d006052_P004 | Maize | endoplasmic reticulum | 30.93 | 24.34 |
| AT2G24420.1 | Thale cress | endoplasmic reticulum, vacuole | 27.32 | 24.09 |
| HORVU5Hr1G074800.2 | Barley | plastid | 29.38 | 21.43 |
| Os04t0607150-00 | Rice | vacuole | 20.1 | 21.37 |
| TraesCS2B01G451900.1 | Wheat | golgi, vacuole | 21.65 | 19.95 |
| TraesCS2D01G428600.1 | Wheat | golgi, vacuole | 21.13 | 19.57 |
| TraesCS2A01G430700.2 | Wheat | golgi, vacuole | 21.39 | 19.48 |
| KXG27068 | Sorghum | plasma membrane | 18.56 | 18.41 |
| Zm00001d024398_P001 | Maize | cytosol | 6.19 | 18.18 |
| HORVU2Hr1G100500.17 | Barley | endoplasmic reticulum, golgi, mitochondrion, nucleus | 20.1 | 16.92 |
Protein Annotations
| MapMan:35.2 | EntrezGene:829132 | UniProt:A0A178UXP5 | ProteinID:AEE85719.1 | ArrayExpress:AT4G30090 | EnsemblPlantsGene:AT4G30090 |
| RefSeq:AT4G30090 | TAIR:AT4G30090 | RefSeq:AT4G30090-TAIR-G | EnsemblPlants:AT4G30090.1 | TAIR:AT4G30090.1 | Unigene:At.31861 |
| ncoils:Coil | UniProt:F4JPI4 | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_194738.4 | ProteinID:OAO98806.1 |
| PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0005052 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020090 | PO:PO:0025022 | PANTHER:PTHR34360 | PANTHER:PTHR34360:SF1 | SUPFAM:SSF58113 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI00001AA8E4 | SEG:seg | : | : | : |
Description
Golgin family A protein [Source:UniProtKB/TrEMBL;Acc:F4JPI4]
Coordinates
chr4:-:14708624..14711685
Molecular Weight (calculated)
44817.0 Da
IEP (calculated)
9.367
GRAVY (calculated)
-0.455
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFFKLLLFL FLVTLQIASF TGNGEASSSS SENNGCNGDQ NHLLNELKST VSALQSIIKE KNQELLSKEE KIRGLELYIR EKPYLFESEI DFSQFENPVK
101: HASEVEEKVY ELQKQVFGLK REVETQRKRR LEVEAELADK KVAQLSSKLE NIDGWFLSKL GLNPTESQAY LMTLWHQHLS PTLHTTLQMV SMKIEQVQKW
201: SEPHIETLNS QWIPSIKDAC VTITIYLEPK VQYITDKSIE LLYTSKQALT PHLIQGFDAS YYYLEVIRTH THPYTTRIMT LTKPHLERVQ VALEPYTENV
301: RHGFQKLVNS TKIYHQQAQE MLKNNEITKP VATMDLAWVG ATALIGFPLI FIIKLLSAVS NPKGKKRHNH KKEPTTGYRR AKRRHPHQ
101: HASEVEEKVY ELQKQVFGLK REVETQRKRR LEVEAELADK KVAQLSSKLE NIDGWFLSKL GLNPTESQAY LMTLWHQHLS PTLHTTLQMV SMKIEQVQKW
201: SEPHIETLNS QWIPSIKDAC VTITIYLEPK VQYITDKSIE LLYTSKQALT PHLIQGFDAS YYYLEVIRTH THPYTTRIMT LTKPHLERVQ VALEPYTENV
301: RHGFQKLVNS TKIYHQQAQE MLKNNEITKP VATMDLAWVG ATALIGFPLI FIIKLLSAVS NPKGKKRHNH KKEPTTGYRR AKRRHPHQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.