Factsheet for PGSC0003DMT400073989

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g008970.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	86.46	87.84
GSMUA_Achr6P01760_001	Banana	endoplasmic reticulum	43.57	43.47
HORVU7Hr1G052350.1	Barley	cytosol, plasma membrane	39.05	41.99
GSMUA_Achr10P...	Banana	endoplasmic reticulum	41.31	41.12
Zm00001d024398_P001	Maize	cytosol	12.19	40.91
GSMUA_Achr9P13940_001	Banana	endoplasmic reticulum	40.63	40.63
Os09t0497700-01	Rice	plasma membrane	40.41	40.13
PGSC0003DMT400076024	Potato	cytosol, nucleus	23.93	39.85
TraesCS7A01G253000.2	Wheat	golgi	40.41	39.6
TraesCS7B01G149500.2	Wheat	endoplasmic reticulum	40.18	39.38
Os08t0519400-01	Rice	plasma membrane	40.18	39.38
KXG25592	Sorghum	endoplasmic reticulum, golgi, plasma membrane	40.41	39.34
OQU89720	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	40.41	39.0
TraesCS5D01G283100.2	Wheat	endoplasmic reticulum, extracellular, plasma membrane	40.18	38.78
PGSC0003DMT400038486	Potato	endoplasmic reticulum	40.41	38.58
Zm00001d049764_P001	Maize	plasma membrane	39.5	38.38
TraesCS5B01G275100.2	Wheat	endoplasmic reticulum, extracellular, plasma membrane	39.5	38.29
TraesCS5A01G275800.2	Wheat	endoplasmic reticulum	39.28	38.07
Zm00001d029841_P001	Maize	cytosol	19.19	37.78
Zm00001d031532_P001	Maize	plasma membrane	36.79	35.98
Zm00001d005407_P001	Maize	extracellular	22.12	34.39
Zm00001d006052_P004	Maize	endoplasmic reticulum	37.7	33.87
HORVU5Hr1G074800.2	Barley	plastid	39.28	32.71
AT4G30090.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	27.77	31.7
CDY43554	Canola	plasma membrane	26.86	30.67
Bra011163.1-P	Field mustard	plasma membrane	25.06	30.25
CDX68621	Canola	plasma membrane	26.41	30.23
CDY12172	Canola	cytosol	6.55	29.0
Os04t0607150-00	Rice	vacuole	23.25	28.22
TraesCS2D01G428600.1	Wheat	golgi, vacuole	24.15	25.54
TraesCS2A01G430700.2	Wheat	golgi, vacuole	24.38	25.35
HORVU2Hr1G002290.5	Barley	endoplasmic reticulum, extracellular	6.77	25.21
TraesCS2B01G451900.1	Wheat	golgi, vacuole	23.7	24.94
KXG27068	Sorghum	plasma membrane	21.44	24.3
CDX92946	Canola	cytosol	13.54	21.74
HORVU2Hr1G100500.17	Barley	endoplasmic reticulum, golgi, mitochondrion, nucleus	22.35	21.48
Bra001871.1-P	Field mustard	cytosol	13.32	21.45
CDY24314	Canola	mitochondrion	4.97	11.46

Protein Annotations

EnsemblPlants:PGSC0003DMT400073989	EnsemblPlantsGene:PGSC0003DMG400028754	EntrezGene:102582816	Gene3D:1.20.120.20	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	ncoils:Coil	PANTHER:PTHR34360	PANTHER:PTHR34360:SF1	PGSC:PGSC0003DMG400028754	RefSeq:XP_006361627.1
RefSeq:XP_006361628.1	RefSeq:XP_006361629.1	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF57997	TMHMM:TMhelix
UniParc:UPI0002963926	UniProt:M1CSZ0	MapMan:35.2	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400028754]

Coordinates

chr7:-:6710751..6720362

Molecular Weight (calculated)

51508.5 Da

IEP (calculated)

10.406

GRAVY (calculated)

-0.598

Length

443 amino acids

Sequence
(BLAST)

001: MALLKLLLYS FLFLQIFSTI SSNGVADSEP IVDSDADSSI RLQLDQLNSK ISLLESRIDD STRELRTKDE RIKELENTVD LKLAKLASLQ SELQLFQEKG
101: SLNAKELVAK ANVRATELER QIDALRRETE AQNKKKNILE ISTNEAEEKI QKLNLKLESL QRINEEQNAR IHKTKRALQV AEEEMMKAKL EASSVSEQLE
201: QVKEGWLPPW LAVHLVHFRS IVMTYWNEHG RPALDLTLKK ALETKSEVVK MAKPHIHSFK TVWIPAMKER SVEFARDAGP HIQRLKTKSI HLYHESKKFM
301: EPHIVNAQEV IQPYVKEVRK VADPYVDQVS LVMKPHIDKA RILSQPYTKK VHRHYRKVKK TVSLYHHQAQ ENIHHMLKNH HITKPYATKE LAWYLASALL
401: ALPVIFLLNL VSDFRRSKKP KKHSHRHHTS HTRRRAKRAH PDK

Best Arabidopsis Sequence Match ( AT2G24420.2 )
(BLAST)

001: MAAAKLVALL LLLALVFNFT TCIFADAGID GGDEPKLRSD GGDIELDQLN AKIRALESQI DDKTKELKGR EELVTEKEKL LQERQDKVAS LETEVSSLRK
101: KGSSDSVELL SKAQARATEL EKQVEVLKKF LEQKNKEKEL IEAQTSETEK KLNELNSRVE KLHKTNEEQK NKIRKLERAL KISEEEMLRT KHEATTKAKE
201: LMEVHGAWLP PWFAVHWSSF QTVAGTHWDA HGKPVMEKVT QKVTLAKNQA EKWAKPHMAN VKTKYIPAIK ETVKTHVEPH VQTLSTKAKE AYHASKSAVT
301: PHIVKFQEHV DPYYQEAKKF SKPYVDQVAT ATKPHVDKVR ATMKPYTTKT VHYYKEFLES ASTYHHQLQA NVESKLKSHE LLEPFATKEF IWFAASALLA
401: LPIFIVYKFL CSLFCTKTKK PIRQSHQHTR RKARRGHSDK

Arabidopsis Description

AT2G24420 protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQ26]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.