Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 6
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P01760_001 | Banana | endoplasmic reticulum | 71.01 | 71.17 |
| GSMUA_Achr9P13940_001 | Banana | endoplasmic reticulum | 62.02 | 62.3 |
| HORVU7Hr1G052350.1 | Barley | cytosol, plasma membrane | 52.58 | 56.8 |
| Os08t0519400-01 | Rice | plasma membrane | 55.96 | 55.09 |
| Os09t0497700-01 | Rice | plasma membrane | 55.06 | 54.93 |
| VIT_04s0008g02720.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 55.28 | 54.79 |
| KXG25592 | Sorghum | endoplasmic reticulum, golgi, plasma membrane | 55.06 | 53.85 |
| KRH52641 | Soybean | endoplasmic reticulum | 53.93 | 53.81 |
| Zm00001d029841_P001 | Maize | cytosol | 27.19 | 53.78 |
| TraesCS7B01G149500.2 | Wheat | endoplasmic reticulum | 53.48 | 52.65 |
| KRH61982 | Soybean | endoplasmic reticulum | 51.69 | 52.63 |
| PGSC0003DMT400076024 | Potato | cytosol, nucleus | 31.24 | 52.26 |
| Zm00001d031532_P001 | Maize | plasma membrane | 53.03 | 52.1 |
| TraesCS7A01G253000.2 | Wheat | golgi | 52.58 | 51.77 |
| Zm00001d049764_P001 | Maize | plasma membrane | 52.81 | 51.54 |
| Zm00001d024398_P001 | Maize | cytosol | 15.28 | 51.52 |
| OQU89720 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 51.46 | 49.89 |
| TraesCS5D01G283100.2 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 51.24 | 49.67 |
| Solyc08g074290.2.1 | Tomato | nucleus | 49.21 | 49.21 |
| TraesCS5B01G275100.2 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 50.11 | 48.8 |
| TraesCS5A01G275800.2 | Wheat | endoplasmic reticulum | 50.11 | 48.8 |
| Zm00001d005407_P001 | Maize | extracellular | 31.01 | 48.42 |
| Bra011260.1-P | Field mustard | endoplasmic reticulum | 47.64 | 48.4 |
| CDY28257 | Canola | endoplasmic reticulum | 47.42 | 48.17 |
| AT4G31340.1 | Thale cress | endoplasmic reticulum | 47.19 | 48.05 |
| CDX68735 | Canola | endoplasmic reticulum | 47.64 | 47.96 |
| Solyc08g006030.2.1 | Tomato | unclear | 47.42 | 47.63 |
| CDX72304 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 45.84 | 46.9 |
| AT2G24420.1 | Thale cress | endoplasmic reticulum, vacuole | 45.84 | 46.36 |
| CDY20313 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 44.04 | 45.58 |
| CDY46149 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 44.04 | 45.58 |
| PGSC0003DMT400038486 | Potato | endoplasmic reticulum | 47.19 | 45.26 |
| Bra032096.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 44.72 | 44.22 |
| CDY34774 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 41.8 | 44.18 |
| Zm00001d006052_P004 | Maize | endoplasmic reticulum | 48.31 | 43.61 |
| Solyc07g008970.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 41.35 | 42.2 |
| HORVU5Hr1G074800.2 | Barley | plastid | 49.66 | 41.54 |
| PGSC0003DMT400073989 | Potato | extracellular, plasma membrane, vacuole | 41.12 | 41.31 |
| Bra007856.1-P | Field mustard | endoplasmic reticulum, vacuole | 40.67 | 39.61 |
| Solyc05g010750.2.1 | Tomato | cytosol | 11.01 | 38.89 |
| CDY12172 | Canola | cytosol | 8.54 | 38.0 |
| Solyc05g010760.1.1 | Tomato | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 8.76 | 37.5 |
| HORVU2Hr1G002290.5 | Barley | endoplasmic reticulum, extracellular | 9.89 | 36.97 |
| AT4G30090.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 29.21 | 33.51 |
| Os04t0607150-00 | Rice | vacuole | 27.42 | 33.42 |
| CDY43554 | Canola | plasma membrane | 28.99 | 33.25 |
| CDX68621 | Canola | plasma membrane | 28.76 | 33.07 |
| Bra011163.1-P | Field mustard | plasma membrane | 27.19 | 32.97 |
| TraesCS2B01G451900.1 | Wheat | golgi, vacuole | 30.11 | 31.83 |
| Bra024012.1-P | Field mustard | mitochondrion | 44.72 | 31.69 |
| CDY67576 | Canola | extracellular | 7.19 | 31.68 |
| TraesCS2D01G428600.1 | Wheat | golgi, vacuole | 29.66 | 31.5 |
| TraesCS2A01G430700.2 | Wheat | golgi, vacuole | 29.66 | 30.99 |
| CDY13424 | Canola | plasma membrane | 44.72 | 30.85 |
| KXG27068 | Sorghum | plasma membrane | 26.07 | 29.67 |
| HORVU2Hr1G100500.17 | Barley | endoplasmic reticulum, golgi, mitochondrion, nucleus | 29.44 | 28.42 |
| Bra001871.1-P | Field mustard | cytosol | 12.36 | 20.0 |
| CDX92946 | Canola | cytosol | 12.36 | 19.93 |
| CDY24314 | Canola | mitochondrion | 5.17 | 11.98 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P30970_001 | EnsemblPlants:GSMUA_Achr10T30970_001 | EnsemblPlantsGene:GSMUA_Achr10G30970_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF4686 | ncoils:Coil | PANTHER:PTHR34360 | PANTHER:PTHR34360:SF1 | PFAM:PF15742 | SEG:seg |
| SignalP:SignalP-noTM | SUPFAM:SSF58113 | TMHMM:TMhelix | UniParc:UPI000296A27B | UniProt:M0RMX1 | MapMan:35.2 |
Description
DNA repair ATPase-related, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G30970_001]
Coordinates
chr10:-:33156159..33171864
Molecular Weight (calculated)
50903.7 Da
IEP (calculated)
9.595
GRAVY (calculated)
-0.372
Length
445 amino acids
Sequence
(BLAST)
(BLAST)
001: MEASKLLIAS IAISLVFVGV WADAGAEEEA VVVEPDVSDS VLKLELEQLR SKISALESSI LDKTRELKSK DENIAHLEKI IEEKSVSILS LQSEIESVQR
101: KGAVDAEELL KRANLEAGEL GKLVEKLKNE IELQNRRRHA LDARASEAEK KVQELNLKLE NLEKTNDEQR HRIQKTERAL KVAEEELMRA QLEATAKSKE
201: LSQAHGAWLP PWLAAHISHY QELSATYWKE HAKPALDVIL EKASEKLVQA QKWVEPQLEI AKTKWVPAIK ERWVILVTNA EPYVQIVYTK TVEVYHTSKG
301: TIATYVIEVL ELADPYFQVM KKFSKPYINQ VATITKPHVE QMQVYLKPYT KRVVLAYGKF LKSATTYHRQ VQAGIREHLK RYELTKVIAT KELVWFMASA
401: LLALPIFLVY RLLLNTFCSK KTIKSTRNGD SNHTHRKPKH RHADK
101: KGAVDAEELL KRANLEAGEL GKLVEKLKNE IELQNRRRHA LDARASEAEK KVQELNLKLE NLEKTNDEQR HRIQKTERAL KVAEEELMRA QLEATAKSKE
201: LSQAHGAWLP PWLAAHISHY QELSATYWKE HAKPALDVIL EKASEKLVQA QKWVEPQLEI AKTKWVPAIK ERWVILVTNA EPYVQIVYTK TVEVYHTSKG
301: TIATYVIEVL ELADPYFQVM KKFSKPYINQ VATITKPHVE QMQVYLKPYT KRVVLAYGKF LKSATTYHRQ VQAGIREHLK RYELTKVIAT KELVWFMASA
401: LLALPIFLVY RLLLNTFCSK KTIKSTRNGD SNHTHRKPKH RHADK
001: MAAAKLVALL LLALLFTTSV FADADEPEVS EAAGSDGSSK IHLDQLNAKI RALESQIDEK TREVQGKDEV VAEKEKLLKE REDKIASLQT EVSSLQKKGS
101: SDSAKQLGKA QARADELEKQ VEVLKNFLEQ KNKEKDSTEA RTNEAEKKLR ELNSSLDKLQ KTNEEQKNKI GKLERAIKIA EEEMLRTKLE ATTKAKELLE
201: AHGSWLPPWL AVHWFKFQTY TETHWEAHGK PAVETVILKV TEAKAQAEKW AEPHVENVKT KYIPAIKETV TIHVEPHFRT LSIKAKEAYH SSKSAVSPHI
301: VTVQEFVDPY YQEAKKFSKP YVDQVATTTK PHVDKMKVAM KPYTTKVIIV YTEFLESATT YHNQVQAHVE RKLKSHELTE PFATNEFVWF AASALLVFPI
401: FVAYRVLSSL FCTKTKKPVK HPHHHGRRKA KRAHTDK
101: SDSAKQLGKA QARADELEKQ VEVLKNFLEQ KNKEKDSTEA RTNEAEKKLR ELNSSLDKLQ KTNEEQKNKI GKLERAIKIA EEEMLRTKLE ATTKAKELLE
201: AHGSWLPPWL AVHWFKFQTY TETHWEAHGK PAVETVILKV TEAKAQAEKW AEPHVENVKT KYIPAIKETV TIHVEPHFRT LSIKAKEAYH SSKSAVSPHI
301: VTVQEFVDPY YQEAKKFSKP YVDQVATTTK PHVDKMKVAM KPYTTKVIIV YTEFLESATT YHNQVQAHVE RKLKSHELTE PFATNEFVWF AASALLVFPI
401: FVAYRVLSSL FCTKTKKPVK HPHHHGRRKA KRAHTDK
Arabidopsis Description
AT4G31340 protein [Source:UniProtKB/TrEMBL;Acc:Q8GUN1]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.