Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- golgi 5
- endoplasmic reticulum 6
- plasma membrane 4
- vacuole 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20313 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 77.95 | 79.77 |
| CDY46149 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 77.95 | 79.77 |
| CDY34774 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 74.55 | 77.91 |
| Bra032096.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 79.09 | 77.33 |
| AT4G31340.1 | Thale cress | endoplasmic reticulum | 71.14 | 71.62 |
| Bra007856.1-P | Field mustard | endoplasmic reticulum, vacuole | 73.41 | 70.68 |
| CDY67576 | Canola | extracellular | 14.09 | 61.39 |
| PGSC0003DMT400076024 | Potato | cytosol, nucleus | 32.27 | 53.38 |
| VIT_04s0008g02720.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 54.09 | 53.01 |
| KRH52641 | Soybean | endoplasmic reticulum | 53.64 | 52.91 |
| KRH61982 | Soybean | endoplasmic reticulum | 51.59 | 51.95 |
| Solyc08g074290.2.1 | Tomato | nucleus | 51.82 | 51.24 |
| Solyc08g006030.2.1 | Tomato | unclear | 50.91 | 50.56 |
| PGSC0003DMT400038486 | Potato | endoplasmic reticulum | 51.14 | 48.49 |
| Zm00001d029841_P001 | Maize | cytosol | 24.32 | 47.56 |
| Os09t0497700-01 | Rice | plasma membrane | 47.95 | 47.31 |
| HORVU7Hr1G052350.1 | Barley | cytosol, plasma membrane | 44.09 | 47.09 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 46.36 | 45.84 |
| GSMUA_Achr6P01760_001 | Banana | endoplasmic reticulum | 45.45 | 45.05 |
| KXG25592 | Sorghum | endoplasmic reticulum, golgi, plasma membrane | 46.36 | 44.84 |
| GSMUA_Achr9P13940_001 | Banana | endoplasmic reticulum | 44.55 | 44.24 |
| Os08t0519400-01 | Rice | plasma membrane | 45.23 | 44.03 |
| TraesCS7B01G149500.2 | Wheat | endoplasmic reticulum | 45.0 | 43.81 |
| TraesCS7A01G253000.2 | Wheat | golgi | 44.55 | 43.36 |
| TraesCS5B01G275100.2 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 44.09 | 42.45 |
| Zm00001d049764_P001 | Maize | plasma membrane | 43.86 | 42.32 |
| TraesCS5D01G283100.2 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 43.86 | 42.05 |
| Zm00001d005407_P001 | Maize | extracellular | 27.05 | 41.75 |
| Zm00001d024398_P001 | Maize | cytosol | 12.5 | 41.67 |
| TraesCS5A01G275800.2 | Wheat | endoplasmic reticulum | 43.18 | 41.58 |
| Solyc05g010760.1.1 | Tomato | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 9.77 | 41.35 |
| OQU89720 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 42.73 | 40.96 |
| Zm00001d031532_P001 | Maize | plasma membrane | 42.05 | 40.84 |
| Solyc05g010750.2.1 | Tomato | cytosol | 11.59 | 40.48 |
| Zm00001d006052_P004 | Maize | endoplasmic reticulum | 41.59 | 37.12 |
| HORVU5Hr1G074800.2 | Barley | plastid | 42.73 | 35.34 |
| HORVU2Hr1G002290.5 | Barley | endoplasmic reticulum, extracellular | 9.09 | 33.61 |
| Os04t0607150-00 | Rice | vacuole | 27.27 | 32.88 |
| TraesCS2D01G428600.1 | Wheat | golgi, vacuole | 28.86 | 30.31 |
| TraesCS2B01G451900.1 | Wheat | golgi, vacuole | 28.64 | 29.93 |
| TraesCS2A01G430700.2 | Wheat | golgi, vacuole | 28.86 | 29.81 |
| KXG27068 | Sorghum | plasma membrane | 25.45 | 28.64 |
| AT4G30090.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 24.09 | 27.32 |
| HORVU2Hr1G100500.17 | Barley | endoplasmic reticulum, golgi, mitochondrion, nucleus | 27.5 | 26.25 |
Protein Annotations
| Gene3D:1.20.120.20 | MapMan:35.2 | EntrezGene:816978 | ProteinID:AAD18124.2 | ProteinID:AEC07574.1 | ProteinID:AEC07575.1 |
| EMBL:AF419562 | EMBL:AK316670 | ArrayExpress:AT2G24420 | EnsemblPlantsGene:AT2G24420 | RefSeq:AT2G24420 | TAIR:AT2G24420 |
| RefSeq:AT2G24420-TAIR-G | EnsemblPlants:AT2G24420.1 | TAIR:AT2G24420.1 | Unigene:At.23666 | EMBL:BT010170 | ncoils:Coil |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 |
| GO:GO:0005783 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_565569.1 | RefSeq:NP_850053.1 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0005052 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR34360 |
| PANTHER:PTHR34360:SF1 | UniProt:Q9ZQ26 | SUPFAM:SSF58113 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI00000A7BF2 |
| SEG:seg | : | : | : | : | : |
Description
AT2G24420 protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQ26]
Coordinates
chr2:+:10379948..10383405
Molecular Weight (calculated)
50354.6 Da
IEP (calculated)
9.975
GRAVY (calculated)
-0.651
Length
440 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAKLVALL LLLALVFNFT TCIFADAGID GGDEPKLRSD GGDIELDQLN AKIRALESQI DDKTKELKGR EELVTEKEKL LQERQDKVAS LETEVSSLRK
101: KGSSDSVELL SKAQARATEL EKQVEVLKKF LEQKNKEKEL IEAQTSETEK KLNELNSRVE KLHKTNEEQK NKIRKLERAL KISEEEMLRT KHEATTKAKE
201: LMEVHGAWLP PWFAVHWSSF QTVAGTHWDA HGKPVMEKVT QKVTLAKNQA EKWAKPHMAN VKTKYIPAIK ETVKTHVEPH VQTLSTKAKE AYHASKSAVT
301: PHIVKFQEHV DPYYQEAKKF SKPYVDQVAT ATKPHVDKVR ATMKPYTTKT VHYYKEFLES ASTYHHQLQA NVESKLKSHE LLEPFATKEF IWFAASALLA
401: LPIFIVYKFL CSLFCTKTKK PIRQSHQHTR RKARRGHSDK
101: KGSSDSVELL SKAQARATEL EKQVEVLKKF LEQKNKEKEL IEAQTSETEK KLNELNSRVE KLHKTNEEQK NKIRKLERAL KISEEEMLRT KHEATTKAKE
201: LMEVHGAWLP PWFAVHWSSF QTVAGTHWDA HGKPVMEKVT QKVTLAKNQA EKWAKPHMAN VKTKYIPAIK ETVKTHVEPH VQTLSTKAKE AYHASKSAVT
301: PHIVKFQEHV DPYYQEAKKF SKPYVDQVAT ATKPHVDKVR ATMKPYTTKT VHYYKEFLES ASTYHHQLQA NVESKLKSHE LLEPFATKEF IWFAASALLA
401: LPIFIVYKFL CSLFCTKTKK PIRQSHQHTR RKARRGHSDK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.