Factsheet for Bra011163.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
extracellular 5
golgi 4
plasma membrane 6
endoplasmic reticulum 4
vacuole 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43554	Canola	plasma membrane	97.0	91.75
CDX68621	Canola	plasma membrane	95.91	90.96
AT4G30090.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	71.39	67.53
Zm00001d029841_P001	Maize	cytosol	18.53	30.22
HORVU7Hr1G052350.1	Barley	cytosol, plasma membrane	31.61	28.16
HORVU2Hr1G002290.5	Barley	endoplasmic reticulum, extracellular	8.99	27.73
GSMUA_Achr6P01760_001	Banana	endoplasmic reticulum	32.97	27.25
GSMUA_Achr10P...	Banana	endoplasmic reticulum	32.97	27.19
KXG25592	Sorghum	endoplasmic reticulum, golgi, plasma membrane	33.24	26.81
Os09t0497700-01	Rice	plasma membrane	32.43	26.68
TraesCS7A01G253000.2	Wheat	golgi	32.7	26.55
Zm00001d031532_P001	Maize	plasma membrane	32.7	26.49
Os08t0519400-01	Rice	plasma membrane	31.88	25.89
TraesCS7B01G149500.2	Wheat	endoplasmic reticulum	31.88	25.89
Zm00001d005407_P001	Maize	extracellular	19.89	25.61
TraesCS5B01G275100.2	Wheat	endoplasmic reticulum, extracellular, plasma membrane	31.88	25.6
TraesCS5A01G275800.2	Wheat	endoplasmic reticulum	31.88	25.6
TraesCS5D01G283100.2	Wheat	endoplasmic reticulum, extracellular, plasma membrane	31.88	25.49
Solyc07g008970.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	29.97	25.23
GSMUA_Achr9P13940_001	Banana	endoplasmic reticulum	30.25	25.06
PGSC0003DMT400073989	Potato	extracellular, plasma membrane, vacuole	30.25	25.06
Zm00001d049764_P001	Maize	plasma membrane	30.79	24.78
Bra032096.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	30.25	24.67
OQU89720	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	30.79	24.62
Bra011260.1-P	Field mustard	endoplasmic reticulum	29.16	24.43
Bra001871.1-P	Field mustard	cytosol	17.17	22.91
Zm00001d006052_P004	Maize	endoplasmic reticulum	30.52	22.72
Bra007856.1-P	Field mustard	endoplasmic reticulum, vacuole	27.79	22.32
HORVU5Hr1G074800.2	Barley	plastid	31.34	21.62
KXG27068	Sorghum	plasma membrane	22.34	20.97
Os04t0607150-00	Rice	vacuole	20.71	20.82
TraesCS2B01G451900.1	Wheat	golgi, vacuole	22.34	19.48
TraesCS2D01G428600.1	Wheat	golgi, vacuole	22.07	19.33
TraesCS2A01G430700.2	Wheat	golgi, vacuole	21.8	18.78
Zm00001d024398_P001	Maize	cytosol	6.27	17.42
HORVU2Hr1G100500.17	Barley	endoplasmic reticulum, golgi, mitochondrion, nucleus	20.71	16.49
Bra024012.1-P	Field mustard	mitochondrion	27.79	16.24

Protein Annotations

MapMan:35.2	EnsemblPlantsGene:Bra011163	EnsemblPlants:Bra011163.1	EnsemblPlants:Bra011163.1-P	ncoils:Coil	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0016020	GO:GO:0016021
UniProt:M4D3V9	PANTHER:PTHR34360	PANTHER:PTHR34360:SF1	SUPFAM:SSF58113	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI0002546F8E	SEG:seg	:	:	:	:

Description

AT4G30090 (E=1e-097) emb1353 | emb1353 (embryo defective 1353)

Coordinates

chrA01:+:3582555..3584963

Molecular Weight (calculated)

42204.7 Da

IEP (calculated)

9.294

GRAVY (calculated)

-0.499

Length

367 amino acids

Sequence
(BLAST)

001: MAFSKPLFFL VLLTLSLSRE VASSSSSSSE NNGCSNGAHE HCSVDELKST VSSLQSIIKE KNQELHSKEE QIRVLELYIR EKSYLFETDI DFIQSENPVK
101: HGSEAEEKVY ELEKQVLRLK GEVELQRNKR LQVEARAETA DEKGEEFSSK IDMKWFFSKL GLKPNKTQVS LKIKQVQKWS EPHIETMNSK WIPSIKEACV
201: TLTIYLEPKV HYLTEKSIEV LSMSKQAFTP HIIQGFDVSC YYLEVIRTHT APYTSQVMTI AKPHLEKVQV ALEPYTEHVR HGFKKLVDST KVYHQQAQEM
301: LKNNEITKPV ATMDLAWVGA TALIGFPLIF IIKFLSAVSN PKGKRRYTHK QEPSTGYRRA KRRHPHH

Best Arabidopsis Sequence Match ( AT4G30090.1 )
(BLAST)

001: MAFFKLLLFL FLVTLQIASF TGNGEASSSS SENNGCNGDQ NHLLNELKST VSALQSIIKE KNQELLSKEE KIRGLELYIR EKPYLFESEI DFSQFENPVK
101: HASEVEEKVY ELQKQVFGLK REVETQRKRR LEVEAELADK KVAQLSSKLE NIDGWFLSKL GLNPTESQAY LMTLWHQHLS PTLHTTLQMV SMKIEQVQKW
201: SEPHIETLNS QWIPSIKDAC VTITIYLEPK VQYITDKSIE LLYTSKQALT PHLIQGFDAS YYYLEVIRTH THPYTTRIMT LTKPHLERVQ VALEPYTENV
301: RHGFQKLVNS TKIYHQQAQE MLKNNEITKP VATMDLAWVG ATALIGFPLI FIIKLLSAVS NPKGKKRHNH KKEPTTGYRR AKRRHPHQ

Arabidopsis Description

Golgin family A protein [Source:UniProtKB/TrEMBL;Acc:F4JPI4]
SUBAcon: [plasma membrane,endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.